Gene NSE_0499 details

Gene Information

• Locus tag: NSE_0499
• Symbol: ribD
• ID: 3932118
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Neorickettsia sennetsu str. Miyayama
• Kingdom: Bacteria
• Replicon accession: NC_007798
• Strand: +
• Start bp: 419393
• End bp: 420511
• Gene Length: 1119 bp
• Protein Length: 372 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637900655
• Product: riboflavin biosynthesis protein RibD
• Protein accession: YP_506383
• Protein GI: 88608126
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.152952
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTTTT CCAAAATGCA CGGCCGTATT GTATATTACA TGGAAGCGGC AGTAAATGCT 
TCGCTTTTTG GACAAGGTTT TACCGCTGAT AATCCCTCTG TTGGATGTAT TATCGTAAAA 
GATGACGAGG TAGTTGGAAA AGGTGTAACT GGGATTAATG GTTCCCCACA TGCGGAAGCG 
GTTGCTCTAA AAGTTGCCGG TATCAAGGCA AGAGGCGCCG ACTTGTACAC CACACTCGAG 
CCATGTGCAC ACCACGGGAG AACGGCACCT TGCACAGATT TAATTATTGA ATCCGGTATA 
AAGAACGTCT TCATCGGAAC TAGGGACCCA GATACTAGGG TTAATGGTAA AGGCATACAA 
AAGCTTCAGG AAAGCGGAAT TGTAGTTACT ACTGGAATTT TAAAAAGGGA GTGCTGTGTT 
AGCAACATAG GGTATTTTTA CCGTCAAGTT CTTGGGAAAC CATTTGTTAT CCTTAAGACT 
GCAACTACCC TTGATGGAAA AATTGCTTGT TTTAATGGCA AGAGCGCTTG GATTACGAGT 
CCTGCTATGA GGAGAACAGC GCACATGCTG AGACGTATGT CTTCATCTGT TATGATTAGC 
TATTCAACTC TTAAACATGA TGATCCACAG CTTAGCTGTA GGTTACCAGG TGTGAAAAAA 
GAGTCGATTA AAGTGGTACT TGATACTCGA GGTGAGATTT CTTCTCCTAA TTTTAAAATC 
TTCAATGACG GAATTGTCTG GTCATTCGGT AAAAGAAATA TATTCAAACA TAAAAATTTC 
TTTAATTTTG AAGCTAATCT AAACGGGGAG ATGTTGGATC TGGAGGACGT CTTGCAGCAA 
CTTGGGACGA TGGGTATTAA TAGCGTGTTG GTAGAATGTG GAGGCAAACT ATTTTCATCG 
TTTATAACTG GGGATTTATT CGATCAGATT ATCTGGTTTA GATCCAATAA AGTTGCCGGT 
GGTGATGCAC TGAGTTGTTG CAGTAATTTG AATTTCAATC ATCCTTTGAA GTTTATTAAA 
TTAAGAAAAA CTAACGAAAT AAAAATTCAC GATGAATCAG TCGAGTCTTT TGCCAACGAT 
AACTCTGAGA GATTCAATAC TATTCTAGGA AGTTTGTAG 

 

Protein sequence

MSFSKMHGRI VYYMEAAVNA SLFGQGFTAD NPSVGCIIVK DDEVVGKGVT GINGSPHAEA 
VALKVAGIKA RGADLYTTLE PCAHHGRTAP CTDLIIESGI KNVFIGTRDP DTRVNGKGIQ 
KLQESGIVVT TGILKRECCV SNIGYFYRQV LGKPFVILKT ATTLDGKIAC FNGKSAWITS 
PAMRRTAHML RRMSSSVMIS YSTLKHDDPQ LSCRLPGVKK ESIKVVLDTR GEISSPNFKI 
FNDGIVWSFG KRNIFKHKNF FNFEANLNGE MLDLEDVLQQ LGTMGINSVL VECGGKLFSS 
FITGDLFDQI IWFRSNKVAG GDALSCCSNL NFNHPLKFIK LRKTNEIKIH DESVESFAND 
NSERFNTILG SL