| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0376 |
|---|
| Symbol | sdhA |
|---|
| ID | 3931671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Neorickettsia sennetsu str. Miyayama |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007798 |
|---|
| Strand | + |
|---|
| Start bp | 309273 |
|---|
| End bp | 311066 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637900532 |
|---|
| Product | succinate dehydrogenase flavoprotein subunit |
|---|
| Protein accession | YP_506265 |
|---|
| Protein GI | 88608201 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCTCA GTAGTTACCC AATTGTTGAA CATGAATATG ATGTTGTCGT TGTAGGGGCT
GGTGGTTCTG GGCTCAGGGC TACTTTGGGT ATGGCGAGTC AGGGTTTGAA GGTTGCATGT
CTTTCTAAGG TCTTTCCAAC TAGGAGTCAT ACCGTAGCGG CTCAAGGAGG AATCAGTGCT
GCATTGGGGA ATATCAGTGA AGATGATTGG AGATGGCACG CCTATGATAC TGTCAAGGGT
TCTGATTGGC TTGGTGATCA GGATGCAATT GAATACATGT GTAAAAATGC TTCCAGTTCA
GTAATAGAAT TAGAGAATTT CGGTGTGCCA TTTTCACGGA CGTCTGAAGG TAAAATATAT
CAGCGTCCAT TTGGTGGTAT GACGACGCAT TATGGGAAGG GTCGTGCTAT TCGAACATGT
GCTGCTGAGG ATAAAACAGG CCACGCCATA CTACACGCTC TTTATCAACA GTCTATAAAG
CTGGATACGG AATTTTTTGT GGAATATATA GTCCTTGATT TACTCATGGA TGATGAAGGT
TGTAAGGGAG TCATTGCTTG GGATCTCAAA GATGGCTCAT TACATAGGTT CAGAGCTCAT
ATTGTGGTGA TAGCAACTGG TGGCTACGGT CGTATTTACT TTTCAGCCAC AGGTGCGCAT
ACCTGTACGG GCGATGGAAA TGCATTTGTC CTGAGAGCTG GTTTGCCGCT CCAAGACATG
GAATTTGTGC AATTTCACCC AACCGGTATT TATGGAGCTG GTTGTTTAAT CAGTGAGGCG
GTTCGTGGTG AGGGTGGCTA TCTTATAAAT TCAGAAGGGG AAAGGTTTAT GGCTAAGTAT
GCTCCTTCTG CAATAGATCT TGCGTCCAGA GATGTTGTGA GTCGTGCAAT CACTATGGAG
ATCCGTGCTG GTAGAGGTGT TGGCCCAAAG AAAGATCACA TTTACCTTCA AGTTTCACAT
TTAGGTTCTA AGGTTATAGA ACAACGGCTT CCGGGTATAA GCGAAACTGC ACGTATCTTT
GCAAATGTGG ATGTGACGAA AGAGCCTATT CCGGTACTTC CGACTGTCCA CTATAACATG
GGAGGGATTC CAGCAAATTA TCATGGGGAG GTCCTTACCG TCGATGATGA GAATGTAGAG
AAAGTTGTTC CAGGTTTGAT GGCTATAGGG GAAGCTGCTT GTATTTCAGT ACATGGCGCG
AATAGACTTG GCTCAAATTC TTTACTGGAT CTTGTCGTTT TTGGTAGGAC GGCTGCTATT
AGGGCCAGAG AGGTCATAAA GGCCAATACG AAGCACTCTC CTATCGATAA GGAGTTGACA
GAGCGGGTTC TGGCGCGCTT CGATAGGTTC CGTTACGCAG ACGGTGGGCT TCCTACAGCT
GTGCTAAGAA GAAAAATGCA ATTGATAATG CAGGAGCATG CTGCCGTTTT TAGGACTCAG
GAGGTCCTGG ATGAAGGGTG TAAAAAAATG CGGGAGTTCC TCCGTGAAAT GGATGAGATC
AATGTAACTG ACCGTTCACT TGTCTGGAAT ACTGACCTCG TAGAAACGCT TGAGCTCGAT
AATATGGTGA GCCAGGCTGT TGCAACAATA GAGTCAGCTG CAAATAGGAA AGAAAGTAGA
GGCAGCCATG CTAGAGAAGA TTATCCTGAA AGAGATGATG AGAACTGGCT CCGTCACACG
CTGTTTTGGT TCCTACCAGA CGGTAATGAG ACAAAGTTTG GCTACAGGCC AGTACGTCTG
CAGCCAATGA CTAATGAAAT AGAATCATTT CCTCCTCAGA AGAGGGTCTA CTAG
|
|---|
| Protein sequence | MALSSYPIVE HEYDVVVVGA GGSGLRATLG MASQGLKVAC LSKVFPTRSH TVAAQGGISA
ALGNISEDDW RWHAYDTVKG SDWLGDQDAI EYMCKNASSS VIELENFGVP FSRTSEGKIY
QRPFGGMTTH YGKGRAIRTC AAEDKTGHAI LHALYQQSIK LDTEFFVEYI VLDLLMDDEG
CKGVIAWDLK DGSLHRFRAH IVVIATGGYG RIYFSATGAH TCTGDGNAFV LRAGLPLQDM
EFVQFHPTGI YGAGCLISEA VRGEGGYLIN SEGERFMAKY APSAIDLASR DVVSRAITME
IRAGRGVGPK KDHIYLQVSH LGSKVIEQRL PGISETARIF ANVDVTKEPI PVLPTVHYNM
GGIPANYHGE VLTVDDENVE KVVPGLMAIG EAACISVHGA NRLGSNSLLD LVVFGRTAAI
RAREVIKANT KHSPIDKELT ERVLARFDRF RYADGGLPTA VLRRKMQLIM QEHAAVFRTQ
EVLDEGCKKM REFLREMDEI NVTDRSLVWN TDLVETLELD NMVSQAVATI ESAANRKESR
GSHAREDYPE RDDENWLRHT LFWFLPDGNE TKFGYRPVRL QPMTNEIESF PPQKRVY
|
|---|
| |