| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0224 |
|---|
| Symbol | tldD |
|---|
| ID | 3931377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Neorickettsia sennetsu str. Miyayama |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007798 |
|---|
| Strand | + |
|---|
| Start bp | 189556 |
|---|
| End bp | 190989 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637900380 |
|---|
| Product | TldD protein |
|---|
| Protein accession | YP_506118 |
|---|
| Protein GI | 88608439 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.016997 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGGTCGG AAGTTCAAGT CTTCTCAAGC CCACCGTTTT ATATGTTAGA TCTCGAAAAA
TTTATTCCCG TTGTTGTATC AGCTCTTCAG GGTGCTGATG GAGGAGAGCT GTTTGTCGAG
TATTCTCTTT CAGAGATTCT GAAGTTCGAG GATGGCGTAC TTGCTGAGAG TAATTATGCC
GATTCTTCTG GATTTGGTCT CCGTGCGTTT TATGGTGATA AGGTGCTCTA TACGCACTCC
TCACACTTGA GCGACGCTAG TATCTTTGAA GCTAGTGATT TTATTCGGAA AAACCGTCTG
GCAGATGGCT CAGCTATGAC TGCAGAGGCT GCGCATGAGA CCGCTTGTGG AGATCCTCTT
TATAAATTTG AAATCCAAGA TGATTCCTTC TCGTTTGAGA GGAAGGTTGC TTTTCTGCGT
CAGGTTTACG ACTATGCTTT ATCAAAGAGC GTAAACATAG CTAGTGCTTC TGTTACTCTT
ATGCGGTTTG TCCGAAGAAT TGGAATCATT AAAAATACCG GAGGAACCGT AACTGACGAA
CAGCCAATGG TGCGCTTAGG GTTTTCAGTC GTGTTAAAGA ATGAGAAAGG TGGAGCTCAA
GGGGGCACTT CAGGCAAAGG GGGGAGATTC GCGCTTTCTG AGTTAATGAA AGACTGGTAC
GTGGTTGTTG ATCGTGCATT TCACAAAGCT GAGGTTGCTT TGCGGGCTGT GCCTTGCCCC
TCTGGTGAGA TGACAGTGGT TTTAGGGAGT GGATGGCCAG GTGTCTTGTT ACACGAAGCT
ATAGGTCATG GGCTAGAAGC TGATTTTAAT CGTAAAGGGG TTTCCGCTTT TTCCGGTCTG
ATTGGTAAGA AGGTTGCTTC TGATGTTGTC AGTGTTGTCG ATAACGGTAG GATCAATGAA
GCTAGGGGTT CCATTAATGT TGATGATGAA GGTACACGAT CTTCATATAA TGTTCTGATA
AAGGACGGGA TCCTCCAGGG TTACATGTTT GACCTCATGA ACGCTAGGTT GATGGGTGAA
CAGTCTACTG GTAATGGGCG TCGCGAGAGC TATATGAACA TTCCGCTGCC ACGCATGACA
AATACGTATA TGTTGCCTGG TGATAAAACT CCGGATGAAA TAATAAAGAG TATTAAAAGC
GGTATTTACG CTGTCGATTT CTCGGGGGGT CAGGTTGATA TAACATCTGG AAAATTTGTA
TTTTCAGCAT CTGAAGCATA CTTAATAGAG GATGGTGAGG TTACAGTACC AGTAAAAGAG
GTTACACTTA TCGGGGATGG TCCAACTATA TTGAAAAGGA TTTCAGCTGT TGGAAATGAT
CTCAAGCTCG ACGACGGGGT AGGTACTTGT GGTAAAGATG GGCAGTCTGT GCCTGTGTGT
GTTGGTCAGC CGACCATTTG TGTGGATAAA ATTACTGTTG GTGGGACTGC TTAA
|
|---|
| Protein sequence | MRSEVQVFSS PPFYMLDLEK FIPVVVSALQ GADGGELFVE YSLSEILKFE DGVLAESNYA
DSSGFGLRAF YGDKVLYTHS SHLSDASIFE ASDFIRKNRL ADGSAMTAEA AHETACGDPL
YKFEIQDDSF SFERKVAFLR QVYDYALSKS VNIASASVTL MRFVRRIGII KNTGGTVTDE
QPMVRLGFSV VLKNEKGGAQ GGTSGKGGRF ALSELMKDWY VVVDRAFHKA EVALRAVPCP
SGEMTVVLGS GWPGVLLHEA IGHGLEADFN RKGVSAFSGL IGKKVASDVV SVVDNGRINE
ARGSINVDDE GTRSSYNVLI KDGILQGYMF DLMNARLMGE QSTGNGRRES YMNIPLPRMT
NTYMLPGDKT PDEIIKSIKS GIYAVDFSGG QVDITSGKFV FSASEAYLIE DGEVTVPVKE
VTLIGDGPTI LKRISAVGND LKLDDGVGTC GKDGQSVPVC VGQPTICVDK ITVGGTA
|
|---|
| |