Gene NSE_0210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNSE_0210 
SymbolvirB9-1 
ID3932149 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNeorickettsia sennetsu str. Miyayama 
KingdomBacteria 
Replicon accessionNC_007798 
Strand
Start bp178418 
End bp179218 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content43% 
IMG OID637900366 
Producttype IV secretion system protein VirB9 
Protein accessionYP_506105 
Protein GI88608055 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02781] P-type conjugative transfer protein VirB9 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.332036 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAGAT CCAATAATTT TGCCATCTTA CTCACACTAC AGTTCATGCT CTGTTTACCC 
GTGTTTGCTG ACCAAAAGGC TCACTCGTTG GCTTCTACTC CGCATATAAA AGAGATGGTT
TACAATCCAA ATGGTATTCA TACGTACACT GGGTTTTTCG GCTACCAGTC CAGCATAGTT
TTCGAGGATG GAGAGGTGAT AAGTACTATT TCTATGGGCG ACTCCACTGG TTGGCAGCTT
GATACTCAGG GCAATAGACT CTTCCTTAAA CCCGTCGAAG ACAACGCGAC AACAAACGTC
ACGATTCTTA CAAGCAAGCG GGTTTATCAT TTTGTCTTCA ACGCCAAGGA AGCTCGGGAT
GTGTACGATC CAGAGCTAGC ATACGAAGTA CGTTTCCGAT ATCCTTCGCA TGCTGTCAGT
ATACAAAGCG CTGGTATTAC AGGCGTGCAG AACGAAACAG TGGGAAGTAC TGAGCTTGAC
ATTGGCAAAA AAGCATATCT GAATTTTGAG TATAAGCTTT CTGGGTATGA TGCAATAAAA
CCACTCAAAG TTTTTGATGA TGGACGCTTT ACTTATATGC AGTTCCCAAG TGTAAATGCA
AACCTGCCGG CTGTTTTCCG AGTTGATTCG CAAGGATATG AGGCTTTGGT GAATTACCAT
ATTTCGGGCA AATATCTGGT AGTGCAAGAG GTTGCACCAT TGTTCACATT GCGTCATGGA
AATGATCACG TGTGTGTTTT CAACATGAAA GCTGCCATTA AGAAAAGAAA GGGCAGTACT
AAGGTTTTTA CAAATGGGTA A
 
Protein sequence
MKRSNNFAIL LTLQFMLCLP VFADQKAHSL ASTPHIKEMV YNPNGIHTYT GFFGYQSSIV 
FEDGEVISTI SMGDSTGWQL DTQGNRLFLK PVEDNATTNV TILTSKRVYH FVFNAKEARD
VYDPELAYEV RFRYPSHAVS IQSAGITGVQ NETVGSTELD IGKKAYLNFE YKLSGYDAIK
PLKVFDDGRF TYMQFPSVNA NLPAVFRVDS QGYEALVNYH ISGKYLVVQE VAPLFTLRHG
NDHVCVFNMK AAIKKRKGST KVFTNG