| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_3199 |
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| Symbol | |
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| ID | 3924833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanospirillum hungatei JF-1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_007796 |
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| Strand | + |
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| Start bp | 3490732 |
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| End bp | 3492429 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637898805 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_504600 |
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| Protein GI | 88604422 |
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| COG category | [N] Cell motility
[R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.714786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGCTC ATCATGTCCT ATTTATCTTT CTTATCCTGC TTCTCCTGTT CTGCGGTTGT
ATTACAGATA CAAATGTAAC CGCTCCAGAT ACAGAATCAG GCACACCGGA TACCCTTGCA
ACTCTTCAGA GTTTACTGGA ATCAGATCCT GAAAACCCTG ATCTCTGGTA TGCAATGGCT
GAGATACTAA AAGAACAAGG TGATAACGAA GGGGCAATAC ATGCAATCAC CAGAGCCGCT
GAATTCAGCC CTGGAAACAG CACAATCCTG CTTGCAAAAG CGCACCTCCA CATAACGAAA
GGAGAGAGAG ATCAGGCAAA CCGTGCCATC CTGAAAGTCC TTGATATCCT TCCCGGGAAC
AAAACCGCTT TAGACCTTTT ATCATCCTTG CGAATGAACA CAACAACTCC CCTGAACTAT
ATCCTGGTCG AACATGATCT CCTGATCGAA CCAAATAATA CTTGGTCAGC CTTTAATAAA
GGGCGCCTGC TTTTTGAAGA GGGGAAACAC CGTGAGGCAC TTGCCTGGTT CATCAAAGCT
ACCACCTATG ATCAGAAGAA CGCACCTGCC TGGTACTTCA CCGGAACAAC ATATACCGAA
CTGGGAAATT ATGCGCAGGC AATCGATGCT TTGCAATCGG CACTGACACT TGATCCCTCA
AATGCCGGTG CCTATTATGA GATGGGCAGG GCGTATGAAA AACTGGGAAA CCGCACCGCA
GCCAGGAATT ATTATGAAAC TGCGATAAAA TTAAATCCGG ATAATGTATG GACACGATTT
GTTTATGGAA AAAACCTGGC CATCTCTGGT GACTACGAAT CTGCAATAAA GGAGCTGAAA
ACAAGTCTTA AAGGATCATC ATGTCAGGCA TCAGCCTGGT ATGAACTCGC CAATGCATAT
TACCAGACCG GACAGTATGA CCAGGCTCTT GAGGCTATCA ACTCTGCACT CACCATTGAC
CCATATACAA AAGAATACCG GGCTTTGTAC CTCTCTATAC GGGCAGCACA GGATCCCGCC
TCCTGGTCAC TGCAAAATGT AACAAAAAGA GCTGTTGATG CACCTGAAAA TGCATCGGTT
TGGTTCTATC AGGGCGCGAT TGCATATCAT GACGGGAGGT ATGCAGATGC ACTCACGTAC
CTCACCTCTG CGGTCAGTCT GGATCCGATG AATCCGGAGG CATGGTACTA CCGGGGAGTG
ACCCAGTATG AACTTGGCAG GTATCAGGAT GCATTATGCA GCTTTGATAA AACGATACTC
CTGGATCCCG GAAATGCATG GGCATATTAC TACCGGGGTG ATATCCTGCA GAAAGGGGGA
CAGTGTGAAT ACGCTATTGC CTATCTGAAT AAGGGAATAC AACTGGATCC TACTATTCCC
TGGACATATT ATGTGAAAGG GAACTGTTAC CTGAACCAGA GCAGATATCA ACTTGCTGCA
GATGAATTTG ACAGATCAAT TGACCAGTTC CCCTGTAACC GCTGGGCATG GTTCTTTGGA
GGGCAGAGTT ATTACGGACT CGGAAAATTT TCCATCGCCT ATGATTACTT TACAAAAGCC
CTGTCATTTG ATCCTGAAAA TGAGGAGTTC AGAAGGTGGA AGGCACGGGC AGCTGCAGAG
TCATCGTATC CGGATGAGGC AATCTATCAC TACAACCAGA CCCTCCCGTT CTCAACCGGT
GCCTGTGGCA TCATGTAA
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| Protein sequence | MQAHHVLFIF LILLLLFCGC ITDTNVTAPD TESGTPDTLA TLQSLLESDP ENPDLWYAMA
EILKEQGDNE GAIHAITRAA EFSPGNSTIL LAKAHLHITK GERDQANRAI LKVLDILPGN
KTALDLLSSL RMNTTTPLNY ILVEHDLLIE PNNTWSAFNK GRLLFEEGKH REALAWFIKA
TTYDQKNAPA WYFTGTTYTE LGNYAQAIDA LQSALTLDPS NAGAYYEMGR AYEKLGNRTA
ARNYYETAIK LNPDNVWTRF VYGKNLAISG DYESAIKELK TSLKGSSCQA SAWYELANAY
YQTGQYDQAL EAINSALTID PYTKEYRALY LSIRAAQDPA SWSLQNVTKR AVDAPENASV
WFYQGAIAYH DGRYADALTY LTSAVSLDPM NPEAWYYRGV TQYELGRYQD ALCSFDKTIL
LDPGNAWAYY YRGDILQKGG QCEYAIAYLN KGIQLDPTIP WTYYVKGNCY LNQSRYQLAA
DEFDRSIDQF PCNRWAWFFG GQSYYGLGKF SIAYDYFTKA LSFDPENEEF RRWKARAAAE
SSYPDEAIYH YNQTLPFSTG ACGIM
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