| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_2886 |
|---|
| Symbol | |
|---|
| ID | 3924181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | - |
|---|
| Start bp | 3168753 |
|---|
| End bp | 3169715 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637898498 |
|---|
| Product | farnesyltranstransferase |
|---|
| Protein accession | YP_504297 |
|---|
| Protein GI | 88604119 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.435226 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTTG AGACATACCT GAAAAAAACA GCAGACGAGG TCAATTCTCT CCTGCAGGAT
TGTTATGGAG ATCCGAAAAC TGCCCTCTCC AGGGCAGCAA ATCACCTGTT ATTCGCCGGA
GGAAAACGTC TCCGTCCGGC ATTATTCAAA CTGGCAGCAG ATGCCGTAAC TCCCGGGGCA
TCACAGAAGA TAATGCAAGC CGGCCTCGCC CTTGAGGTGA CTCATAACTT CACGCTGATT
CATGATGACA TCATGGACAA GGATGTGTAC CGGCGTGGTC AGAAGACTGT ACATACTCTT
TGGGGTGAGC CTGCTGCAAT ACTTGCTGGA GATGTTCTCT ATGCCCGAGC ATTCTTCCTA
ATTTGTAATG CTGAAGCTCC GGAAGGTGCA AAGGTCCGGG CGATATCTCT TCTTGCAAGA
ACCTGTGAGG AGATATGCGA AGGCCAGCAG CAGGATATGT CTTTTGAAGA GCGGGAAGAT
GTGACCCGAG ATGAGTACCT GGACATGATC ACCAAGAAGA CGGGCGTGCT CTATGGTGCT
GCAGCAGCTA TTGGTTCTCT TCTTGCAGGG GGTTCGGAAG CACAGGTTGA TGCACTCTAT
ACCTACGGGT GCAAAATCGG TGCAGCCTTC CAGATTCAGG ATGATCTCAT CGATCTCCTC
GCCTCCTCTG AAAAGTCAGG AAAGGATCAG GCCTCAGACA TCAGGGAGGG AAAACAGACT
CTGATTGCCA TTACTGCACG CGAGAAGGGG ATTGATCTCA AACCTTGGCG TCGCTCGCTG
AGCAAAGATG ATATCGTATC CCTCATTGCC CTGCTGAATG AAAAAGGGGT GATCCACTCC
GTAGAGCAGG AAGCGAATGA TATGATCAGT TCTGCAATCA ATGGTCTTTC TGTCCTTCCT
GATACAACCG AAAAGAAACT GCTTGCTGAT CTTGCCTGGT ACTTTATCAA AAGGGACTAC
TGA
|
|---|
| Protein sequence | MELETYLKKT ADEVNSLLQD CYGDPKTALS RAANHLLFAG GKRLRPALFK LAADAVTPGA
SQKIMQAGLA LEVTHNFTLI HDDIMDKDVY RRGQKTVHTL WGEPAAILAG DVLYARAFFL
ICNAEAPEGA KVRAISLLAR TCEEICEGQQ QDMSFEERED VTRDEYLDMI TKKTGVLYGA
AAAIGSLLAG GSEAQVDALY TYGCKIGAAF QIQDDLIDLL ASSEKSGKDQ ASDIREGKQT
LIAITAREKG IDLKPWRRSL SKDDIVSLIA LLNEKGVIHS VEQEANDMIS SAINGLSVLP
DTTEKKLLAD LAWYFIKRDY
|
|---|
| |