| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_2875 |
|---|
| Symbol | |
|---|
| ID | 3923832 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | - |
|---|
| Start bp | 3155222 |
|---|
| End bp | 3157345 |
|---|
| Gene Length | 2124 bp |
|---|
| Protein Length | 707 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637898487 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_504286 |
|---|
| Protein GI | 88604108 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.510483 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGAGG ATGGGGAATT TCTGAACCGT ATCCGCGGTT TACTCAAGAT TTACCCCAGA
GGGCTCACAA TTTCGGAAAT TTCCCAGCGT CTGAAATGTA ACCGGAATTC TGTTGCGAAA
TATCTGGAGA TACTTCAGAT TTCCGGAACG GTTGAGATGC AGCAGATGGG GGCTGCCAAG
GTATTTTATC TCTCACAACG GGTTCCCATC TCCAGTCTTC TGGGCTTTAC CAAAGAAGGA
ATTCTCGTCA TTTCAAGTGA TGGTAGGATA ATCCAGGTTA ACGAGCGGTT TTGCAGAATG
TTTGACCAGG ATGTTACAAC AATTACTGGC ACGTCATATC TGATGCTTCC ACAGGAAATT
TTACGAGCAT TTCATTTTGA CACCTATTTT GATTCAGATT TAGAGACAGA GCATACCGCT
GTTGTCACCT TCACCAAGTA TGACTGGAGG CGGTTCTTTA AAGTAAAATA TATTAAAACC
GTTTTTGACG ACGGACGCTC CGGCCTTACC ATTATCGTGG AAGATGTCAC CCTTGAGACT
GAGATGGAGG AGCGGCTTCG TATCAGTGAA GCCAGATATC GTGGAATTGT TGAAGACCAG
ACCGAACTCA TCTGCCGGTA CAACCGGGAC GGTGTCATTT CATTTGCGAA TGGGGCATTT
TGCAGACTTT TTCAGATGAA TCATACAGAA GCACTGCAAC ACTCCTTATT TGAATTCATG
CATCCGGATG CTTCCCGGCA GATAAAAGAA GGTATGCAGA GTTGTTCCCC CTTGTCCCCG
GTTTTTCAAT CAGAATTTGA ATTCAAACTT CCTTCCGGGC GGTCCAGGTG GTATCACTGG
GTGTCACGGA TGCTGGCTGA TGATAACGGG GGCATTCTTG AGTACCAGGG AGTTGGCAGG
GACATCACCG AACGAAAGAA TGCCGAACGG GAGTTATTAA TTAAAAGTCA TGCCATGGAC
TCTTCTATCG TTCCCATTGC ACTCCTCTCT ATGGAAGGGT CTATCACCTA TGTAAACAGG
GCATTTCTGG AACTATGGGG GTATCATTCT CCAGATGAGG TTATTGGACT GCCTTTTAAG
CACTTTGCCA AAGATATCGA TGTCTCTTCT GCCTCATTTC TATCTCAAAA CCTGTTGCAC
GAGGATCGAT CAGGGTATGT ATATGAAGTA GACGGGGTCC GCCGTGATGG ATCCCAGATA
AACCTCTCAG TAACCATATC AGGGGTCACT GGCCCTGATC GAAATCCCAT CTGTCTGATT
GCCTACCTGT ATGACGTCAC CCACTGGGTC AGGATGGTCC GGGAACTTGA GATTAAGGAT
ACTGCAATCG CACATTCTTA TGAGGGTATG GCTATCATTA CGCCGGATGA TGTGGTAATG
TATGCCAATC CTTCCTTCAA GCGGATCTTC TCCCGTGTCC CGGATGGAAC TATGGTCGGA
AGATCCATTG AGTGGAGTTT AAGTTACTAT CCCCAGATCA TCAGTTCTAT TCCGGATATC
AGGGCTGCAC TTAATGAAAA AGGAAATTTT ACCCGGGTTT TTTCTGATAC AGGGGAAGAT
GGTTCCTCGC TTGTGATACA GGTCCACCTT TCACGGGTAT TTGATAAAAC CGGAGTTCAC
CTGTGCACTC TCATATCGGC TCTTGACATT ACCAGTCAGC GGACCATGGA AGAGTCCCTT
GCACTCATGG TTGAGCAGCT GGAAGGGACA GTAGATCAGA TGGGTGACCC CACCTTCATT
ATATCCCGTG ACCGTATGGT TGTTGCCTGG AATGAAGCGA TGGAGATCCT TACTGGTCTG
AACAAACATG AGATGATCGG TTCACTCAAG TATCAGGAGG TAATCAGGAA CTCAAATCCA
TCTCTCCCCA TCCTGGTTGA CCTCTTTGAC TTATCACCAA AAGAGTTGAT CCAGATTTAT
CCACAGGTCT CACGGGTAGG GAACAGTTTT TACACCGAAG CGTTTGTTCC GGGATTTCAT
GAAGGAAAAG GGACATATGT CTGGGCAAAA GCCTCTCCTA TTACGGATAC CTCCGGAAGA
GTAATCGGGT ATATTCAGAC AATCAAGGAT ATGACAAACT GGAAACGTGC GGTAGAATCG
GTTGTCGGAA AGACAGTCGG CTGA
|
|---|
| Protein sequence | MVEDGEFLNR IRGLLKIYPR GLTISEISQR LKCNRNSVAK YLEILQISGT VEMQQMGAAK
VFYLSQRVPI SSLLGFTKEG ILVISSDGRI IQVNERFCRM FDQDVTTITG TSYLMLPQEI
LRAFHFDTYF DSDLETEHTA VVTFTKYDWR RFFKVKYIKT VFDDGRSGLT IIVEDVTLET
EMEERLRISE ARYRGIVEDQ TELICRYNRD GVISFANGAF CRLFQMNHTE ALQHSLFEFM
HPDASRQIKE GMQSCSPLSP VFQSEFEFKL PSGRSRWYHW VSRMLADDNG GILEYQGVGR
DITERKNAER ELLIKSHAMD SSIVPIALLS MEGSITYVNR AFLELWGYHS PDEVIGLPFK
HFAKDIDVSS ASFLSQNLLH EDRSGYVYEV DGVRRDGSQI NLSVTISGVT GPDRNPICLI
AYLYDVTHWV RMVRELEIKD TAIAHSYEGM AIITPDDVVM YANPSFKRIF SRVPDGTMVG
RSIEWSLSYY PQIISSIPDI RAALNEKGNF TRVFSDTGED GSSLVIQVHL SRVFDKTGVH
LCTLISALDI TSQRTMEESL ALMVEQLEGT VDQMGDPTFI ISRDRMVVAW NEAMEILTGL
NKHEMIGSLK YQEVIRNSNP SLPILVDLFD LSPKELIQIY PQVSRVGNSF YTEAFVPGFH
EGKGTYVWAK ASPITDTSGR VIGYIQTIKD MTNWKRAVES VVGKTVG
|
|---|
| |