| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_2060 |
|---|
| Symbol | |
|---|
| ID | 3923710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | - |
|---|
| Start bp | 2326973 |
|---|
| End bp | 2329927 |
|---|
| Gene Length | 2955 bp |
|---|
| Protein Length | 984 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637897667 |
|---|
| Product | tetratricopeptide TPR_2 |
|---|
| Protein accession | YP_503487 |
|---|
| Protein GI | 88603309 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGATA TACCTGAACA GGAAGGACGC AGTTGGTTTG ATTTTCTGAT CACCCGGGTT
ACTGCTCTCC TTGATGCGGA GGAATATGAC CAGGCCCTTA CTCAGGTTGA CATGGGGCTG
TCTGTCTGGA AGGGTAATCT GTACCTCCTC TTCCTGAAAT CTATCGTTCT TTCGTACCTG
AAACGTCCGG ATGAGGCATT AAGGCAATTA TATCAGATCT ACCGGGAGAA TCCCTTTGAA
GAGAAGTTCA GGGATGAGCT GGGCAGAAAT CTCATGCTCC AGGGGTACTA TCATAGTGCT
CTCTCTGTTC TTCAGCACTA TGAATTTATG TCCAATGGTC TTGCCGGAAT TCGAAAACTC
TTCATCAGTA TCTGCCATAT ATTCACCGGA AACCCGGATC TGGCCATTGA ATATTGTGAC
GGGATACAAT CCCAGCTGGG TGACACCCCT GATGTCACCG GATTTATGGC GACAATTCAT
GCACTCAAAG CTCTCGCTCT TATTCATACG GGGGAGATGT CTGCTGCCGC GGAGATCATG
GCCGCCGTTG GAGAGGAGGG AGATAAAATG CCCCTGGTCC CCTATGTAAA AGGGATATTA
GCATGGAGAT CTGGTGATAT CAGTGCTGCA GAGACCTTTC TTCGGGCTTC ATGCGAGGAC
CAGCCCCAGG ATATGCAGTC AAAAGTTGAT CTTGCTCATC TCCTGACCGA ATGTGGAAGA
GAGGATGAGG CTCTTGTGAT CAGGCGGGAT ATCTCTGGCT TTTATGCACC GCCCCACCCA
GAGGCCGCTC CCGTGTTCAG GGCTGAAGAG CTCCTGAAAT CAGGCAGATA TGAAGAAGCT
GAAGTTTTTC TCGAATCTGC ACAAAAATCA TCTCCGGACG ACATGGATCT CTTCATTCCC
TACCTTTCAT CGTTATATTT CACCGGCCGG TATGATGATC TGATCAGACT GGCAGAGACG
GGTGAAAAGG CGAGCGATGC ATGGAAAGCG ATATATCTGA AAGCATCGGC CCTGTATTCA
TCAGGCAAGA TCAGGGAGGC CATCAGGGTT CTGATAACCG CAGCAGCGAG GGATCGGACG
AATATGATGT TTTCCCTGCT TCACATGAAA TCTGCCGGTT ATTTCAAGCC CCCGTCAGAA
GAGACACCGG AGTCTCTGGC CCTTGAATTA TTCATGACCG ATGGCATGGA TGCTGCAATA
CCACCCTTTG AGGTCCTTGC TCATGCAAGC GGGGCTCCGG AGTATCTGGT TTTTCTCTGT
TTCTGTTACA TTATGGCGAA CCGGGGGACA GATGCCGTTC TCATATCCGA ACGGTTTGCA
GATTCGGAAG AGCAGGATTT CTGTCTGATC CGTGCCATTG CATTCAGGTC GGTCGGTTGC
CTGCATGATG CTGAGATAAT CACACAGGAT GTTCTCACGA AGAGTCCTGA TTCCCGGCCC
GCACTGAATA TGTATGTCAG GACGCTTCTT GAACAGGAAC GATACCGTGA TGCATATTTT
GAACTGAGTT CACGAAAGGA TGCGTTGTCA TCTGACTGCA CTCTGCTTGA AGTGTTTATC
CGCTGCCTTA TCAGGTCTGG TGAATATCGC GATGCAGCCC TTACTGCTGT CCGGATCATG
CAGATGAATC CCGGACGTCC GATGGATTAT TACCTGTGTG CCCTGGCTTG TCAGCTTGAG
GGGAGTTTTC GTACCGGTCT TTATGCGATG CGGGAGAACT TCCGAATATG CGGCTCTTCG
AAGAAAAACC TCCTGATGTA TGGTCGGTTA TTACTCCTGG CTACGGAAGC ACAAGAAGCC
GCGATTCTCT TCTCTGAATG TAAGAATTCC CTTCCAAACA CGGCAGAGGT CAGGTATCTG
CATACAGCAG CCCGGATTCT CTCAGGGAGC GATAAGGAGT GTGAATCGGT TTCGGAGTAT
GCTGCCCGGT TCTTCCAGGC TGAGAAAGGA GAGCTTCGGG CATTTATCGG GGATTACCGG
CAGGCCGCCA GGATGCTTGC AGAGGAGATT CGCCAGGATC CTGATGATTC ATCGCTGCGG
ATTACCTTTG CCAGAGTGTT ATTTGAACTG GAACAGTATG GGGAGGCGCT TTCCCAGCTC
TCTCTTGCAG CCGGCCGGTA TGGATACGAT GGAGAGGTGA AGGACCTACT GGAGGAAGGG
CTGAAGATGC TCCGATTGCA GGGTCCTCTC GAGGATCTGA AAACGATAAG CCATACTCCG
GAGAGGTACG CAGAACTGCT CCATGAACGG GCGGTCAGTC TGAAACGATA TGGGGTGGTC
AGGCTTGCTG TAAATGTCTG TACGACGCTC ACCAATATAG AGTCAGATTC TCCGATAGTC
TCTCGGTACC AGGCAGATGC ATATCACATG CTTGGCGATC TGGAAGAGAA CGAAGAACGA
TATGTACAGG CGATTGCGGT ATATGACCAA CTTCTCCAAA ACGATCCTGA CAACCCTGTT
TTTCTTGCTG AGAAGGGCCT GGTTCTAGAT AATCTCCGTC GGTTTGATGA GGCAGAGCCG
GTTCTCCTTC GAGCCCTTGA ACTGGATCCC TCATCCGGTG TTGCCCATTC TGCACTCTGC
TGGTGTTTAT CCAACCTGGG GCGGCATGAA GAGGCTGTTG TGCATGGGAA TCAGGCTGTT
ATACTCATGC CTTATGAATG GGGAGCCTGG AATAACCGTG GCCTGTCAAG ACTTGGTCTG
CGTGATTTCG AGGGGGCGGT ATCTGATTTC AGGCAGGCAA TCAGGTGTCA GCCCGGAGAG
GTTATTGCAC GGAGAAATCT CTGCGATGCC CTCGCTGCCC TTGATGATGA CGATGCCCAT
GAAGAGTATG AACAGATCAT CGTCAGGTTT GGGAAGCGGG CATTTCCTGA AGAGGAAGAA
GAGATGCCAG CACAACCCCG GGTGCCAGGA AGACCCCTGA AAACTCCGGT CGGGTATATG
GATGGGTATT GGTGA
|
|---|
| Protein sequence | MEDIPEQEGR SWFDFLITRV TALLDAEEYD QALTQVDMGL SVWKGNLYLL FLKSIVLSYL
KRPDEALRQL YQIYRENPFE EKFRDELGRN LMLQGYYHSA LSVLQHYEFM SNGLAGIRKL
FISICHIFTG NPDLAIEYCD GIQSQLGDTP DVTGFMATIH ALKALALIHT GEMSAAAEIM
AAVGEEGDKM PLVPYVKGIL AWRSGDISAA ETFLRASCED QPQDMQSKVD LAHLLTECGR
EDEALVIRRD ISGFYAPPHP EAAPVFRAEE LLKSGRYEEA EVFLESAQKS SPDDMDLFIP
YLSSLYFTGR YDDLIRLAET GEKASDAWKA IYLKASALYS SGKIREAIRV LITAAARDRT
NMMFSLLHMK SAGYFKPPSE ETPESLALEL FMTDGMDAAI PPFEVLAHAS GAPEYLVFLC
FCYIMANRGT DAVLISERFA DSEEQDFCLI RAIAFRSVGC LHDAEIITQD VLTKSPDSRP
ALNMYVRTLL EQERYRDAYF ELSSRKDALS SDCTLLEVFI RCLIRSGEYR DAALTAVRIM
QMNPGRPMDY YLCALACQLE GSFRTGLYAM RENFRICGSS KKNLLMYGRL LLLATEAQEA
AILFSECKNS LPNTAEVRYL HTAARILSGS DKECESVSEY AARFFQAEKG ELRAFIGDYR
QAARMLAEEI RQDPDDSSLR ITFARVLFEL EQYGEALSQL SLAAGRYGYD GEVKDLLEEG
LKMLRLQGPL EDLKTISHTP ERYAELLHER AVSLKRYGVV RLAVNVCTTL TNIESDSPIV
SRYQADAYHM LGDLEENEER YVQAIAVYDQ LLQNDPDNPV FLAEKGLVLD NLRRFDEAEP
VLLRALELDP SSGVAHSALC WCLSNLGRHE EAVVHGNQAV ILMPYEWGAW NNRGLSRLGL
RDFEGAVSDF RQAIRCQPGE VIARRNLCDA LAALDDDDAH EEYEQIIVRF GKRAFPEEEE
EMPAQPRVPG RPLKTPVGYM DGYW
|
|---|
| |