| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_2038 |
|---|
| Symbol | |
|---|
| ID | 3922154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | + |
|---|
| Start bp | 2300593 |
|---|
| End bp | 2302167 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637897645 |
|---|
| Product | signal transduction histidine kinase regulating citrate/malate metabolism |
|---|
| Protein accession | YP_503465 |
|---|
| Protein GI | 88603287 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3290] Signal transduction histidine kinase regulating citrate/malate metabolism |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.032498 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0495143 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAG AGAAGATTGA GATTCTTCGT AATACATTGC AGAATGTCAA AAAGCCTCTT
TCTATTGCAG AAATATCAAG GTTGTCTGAA TTATCCCGAA TTACTACGGC ACGATATCTT
GATCAGATGT ACCTGTCAGG TCAGGTGAAG ATGTTTGAGA TTGGTAAGGC TAAAAAATTC
ATCCTGAGCT CTGAACAATA TACACATAAT CTCTATGATC TCTCTACTAA TTTTGTATTG
ATTCTTGATC AAAACCTTCG TGTTGTATTT ATCAATGAAT CATACTTGAA AAAAATCAAG
ATTTTTAAGG ACAATATTAT TGGGAAGAGG ATACAGTCAT TAAATCTGGA CATCTTTTCT
TCTCCGGAAA TTCTATCATT GCTACATGAG TTTCGTGGTG AGGGTGTTGC GCAGCATCAT
GTTACTATTG AAATAAATGA TGCATCTCAT GTGTATTCTG TTATAATTGC AAAAATTTCA
TTTTTAACAA ATTTTCTCGC AACTGCCATC ATTGCTCAGG ATATTACCGA GAAATTCAAA
AGTGATGAGA AACTCCATTT TTTAGCCTCA ATGGTCTCTT CATCTGAAGA TGCAATTATT
GGTATTGATC TTCATGGAAT TATCCGGTCC TGGAATGATG GTGCTCATAA GATATTTGGA
TATAAAAATG ATGATGTAAT TGGGAAAAGC ATTTCCCTGA TTTTTCCGCC TGAAAAAGAG
GAGGAATATT TAGATCTTTT ATATAAAGTA ATGGCAGGGG AATTAAGTGT TCTAAAAGGA
ACCTATCTGC TATCCAGAAA TAATGTCGAT ACAGATATCT CGTACACGAT CTCTCCTGTA
ACCGACGATA ATGGAAATAT TATCGGGTTA TCAATTATTA TCAGGGACAT TACTGATTTA
AATACGATAC AAAAAGCATT AATCGTCTCC AAAAAAAAGA TCAAGATTTT ATCAGGCATT
ACACGACATG ATATCCTGAA TCAGCTTCAG GCACTTGATG CATTCTCTGA CCTGATAAAG
CCATCTCTAG TGAAAGAACC TCAGGCTTTA GAATACCTAC GTCATATATC AACCTGTAGT
AATAAAATCA GACAACAGAT ACAATTTACA CGGGAATATG AGGAAATTGG TGATAGTGTT
CCTATATGGC AGCCTTTAGA TATGGTGGTA AAGGCCGCAG CTATTGATTT TTTGCCAGAA
ACGATTGTTC TCAACCTTGA GATTACAGAT TATGAATTAT TTGCAGATCC CATGCTGATG
CTCGTTTTCT ATAATCTGAT GGATAACTCA ATTCGTCACG GGATTCATGT TACAAAGATC
AACATCTCTC TCGTTGAAGA TGTATCTGGG ATGGCTGTCC TTGTTTATGA AGACAATGGA
ATTGGCATTC CTGATTTATT GAAAAATCAA ATCTTCGAAA AGGGATATGG CAAAAATAGT
GGTCTTGGGT TATTTCTGGT CCGTGAGATT CTGGAAATCA CAGGATTTGA GATTAAAGAG
ACTGGCAGGG AAAACGTTGG AGCACGATTT GAGATCACCA TTCCTGCACG GGCATTCAGG
AAGAATCGAA CATGA
|
|---|
| Protein sequence | MQKEKIEILR NTLQNVKKPL SIAEISRLSE LSRITTARYL DQMYLSGQVK MFEIGKAKKF
ILSSEQYTHN LYDLSTNFVL ILDQNLRVVF INESYLKKIK IFKDNIIGKR IQSLNLDIFS
SPEILSLLHE FRGEGVAQHH VTIEINDASH VYSVIIAKIS FLTNFLATAI IAQDITEKFK
SDEKLHFLAS MVSSSEDAII GIDLHGIIRS WNDGAHKIFG YKNDDVIGKS ISLIFPPEKE
EEYLDLLYKV MAGELSVLKG TYLLSRNNVD TDISYTISPV TDDNGNIIGL SIIIRDITDL
NTIQKALIVS KKKIKILSGI TRHDILNQLQ ALDAFSDLIK PSLVKEPQAL EYLRHISTCS
NKIRQQIQFT REYEEIGDSV PIWQPLDMVV KAAAIDFLPE TIVLNLEITD YELFADPMLM
LVFYNLMDNS IRHGIHVTKI NISLVEDVSG MAVLVYEDNG IGIPDLLKNQ IFEKGYGKNS
GLGLFLVREI LEITGFEIKE TGRENVGARF EITIPARAFR KNRT
|
|---|
| |