| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_2026 |
|---|
| Symbol | |
|---|
| ID | 3924989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | - |
|---|
| Start bp | 2284961 |
|---|
| End bp | 2286496 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637897634 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_503454 |
|---|
| Protein GI | 88603276 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0784] FOG: CheY-like receiver
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0685118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.11395 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGATA CAGATAACAG TGTCTCTACA AATCAGATCT CATTATTGTA TGTTGATGAT
GAAGAGGTAC TTCTCCATCT TGGTAAGCGA TTCCTTGAGC GAATGGGGGA ATTTTCCGTC
GATATTGTTC AATCAGCTGG AGAAGTTCTT CTTCCCGGCT TTTTGCAAAA ATATGATGCA
ATAATCTCTG ACTACCAGAT GCCCGTTATT GATGGGATTG AATTTCTCAA AGCAATAAGA
GAACAGGGAA ATGATATACC ATTTATACTC TTTACCGGGA GGGGTCGGGA AGAGGTTGTC
ATTGAAGCAA TTAATAACGG GGCAGATTTT TATCTGCAAA AAGGGGGTGA ACCAAAATCC
CAGTTTGCTG AATTATCACA TAAAATCAAA CAGGCGGTCG CGAGAAAAAG GGCAGAAAAA
TCACTAAAGG ACTCACAAAA ACAACTTGCA GATATTATTG ATTTTCTTCC TGATGCAACC
TTTGCCATAG ATCGGTCTGG CACGATCATT GCGTGGAACC GGGCAATTGA GAAGATGACC
GGTTACTCCT CATCACAAAT GCTTGGGAAA GGAAACTATG AGTATGCTGC TACACTTTAT
GGGCATCGTC ATCCGGTTCT GATTGATCTT CTCAATGAGA GCAATGAGGT CTTATCCAGG
TATTATACCA ACATTTCACG TTCAGGAAAT GTAATTCAGG CAGAAGCGGA GTATGTCAAT
ACACAAGGGG ATTTGATCGC ACTATTTATA AAGGCCTGTC CTCTGTATGA TAATGAGGGG
AACATTACTG GATATATTGA ATCGATTCGT GATATAACAG AAGTGAAAAA ATCTGCACGA
AAGATAGAGG AGAATGAAAG AAAATATCGG GTTCTGGCCG AGTATTCACG GGATGCTATT
CTCATCATTG GATTTGACGG AACAATATTT TATATCAACC CTGCCGGTGT CCGGATGGTT
GAAGAAGAAT CTGCGGATAC AGTGCTTGCA AGAAAAAACG TGATGACATA TGTCCATCCT
GATTTCTATG ACCTGGTTTT GCATGATATA GAACAGGTAA GATCAGGAAA TGATTCATAC
ATCTCACAGT ATAAACTCAT CACTGGCAAA AACCGTGAAA TCTGGATCGA GACCCAGGGG
AGAAAGATAC AAATGGATGT GGCAGATGCA ATATATGTCA CATTCCGTGA TATCACTCAA
AAGAAACAGT TGGAAGAAGA GCGGGATATC TTTCTTAAAC GATTATTATC TCAACAAAAA
TTCACGGACG CCCTTCTTGA TGCACTCCCT CTCCCGGTTT TTTGGAAGGA TAAGAACTTC
AGATTTATGG GTTGCAATCA GGCATATTGT ACATATATGG GGATATCAAA AGAAGACCTG
GTGGGAAAAA CAATTGATGA GGTATGGCCT GACCACAATA TATCGCTTGA GACAATAACC
CACGATCAGG AGTTAATTCA TAACAATCCG GTTCAAAAAT ATCAGATAAA AGAGGGTGTT
GCACCAATGA TCAATATCAT GCAGGATCAC AAATGA
|
|---|
| Protein sequence | MIDTDNSVST NQISLLYVDD EEVLLHLGKR FLERMGEFSV DIVQSAGEVL LPGFLQKYDA
IISDYQMPVI DGIEFLKAIR EQGNDIPFIL FTGRGREEVV IEAINNGADF YLQKGGEPKS
QFAELSHKIK QAVARKRAEK SLKDSQKQLA DIIDFLPDAT FAIDRSGTII AWNRAIEKMT
GYSSSQMLGK GNYEYAATLY GHRHPVLIDL LNESNEVLSR YYTNISRSGN VIQAEAEYVN
TQGDLIALFI KACPLYDNEG NITGYIESIR DITEVKKSAR KIEENERKYR VLAEYSRDAI
LIIGFDGTIF YINPAGVRMV EEESADTVLA RKNVMTYVHP DFYDLVLHDI EQVRSGNDSY
ISQYKLITGK NREIWIETQG RKIQMDVADA IYVTFRDITQ KKQLEEERDI FLKRLLSQQK
FTDALLDALP LPVFWKDKNF RFMGCNQAYC TYMGISKEDL VGKTIDEVWP DHNISLETIT
HDQELIHNNP VQKYQIKEGV APMINIMQDH K
|
|---|
| |