Gene Mhun_1958 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMhun_1958 
Symbol 
ID3924260 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanospirillum hungatei JF-1 
KingdomArchaea 
Replicon accessionNC_007796 
Strand
Start bp2204637 
End bp2206433 
Gene Length1797 bp 
Protein Length598 aa 
Translation table11 
GC content45% 
IMG OID637897567 
Productputative PAS/PAC sensor protein 
Protein accessionYP_503387 
Protein GI88603209 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.293409 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAGGAA AACGTAACTG CTATCAAAAA ATGAAAATTT TTCTTTTTTC CTCACACGTT 
CGCTCTCATC TCATACTGGT ACTTTTCATT GTTCTGAGTG GGATTGGAAT TTGTGGAGTC
AATGCTGATC CATCATATGA TACTGCTCTT TCTCTGATTC CTGAAGAACT GGAATGGATC
TCTGCTCATC CTGTTATCAG GATCTGCCCT GACCCCCATT ATCCCCCGTT TGAAATGCTC
ACGTCTGATG GCGGGTATCA GGGAATATCT GCCGATCTCC TCAGGATCAT CGCCGAACGT
GCCGGACTTA CCCTTGAGGT CGTGCCATGT GAGAACTGGA GCCAGTGTAT AGAGAAAATT
CGGAATCGAG AGGTCGATAT CCTTGGTGCT GTGTTTATTT CAGACCTTCG CTCAGGGTAT
CTCTCTTATA CTGATCCCTT TTACTCGTCT CCACTTGAGA TCATCACCAA AAACACCGCC
CCTTCCGATC TAACGCTGGC CGATCTCTCC GGAAAGTCAG TTGCAGTCGT GGATGGATAT
ACATCACATC TCCTCCTGGT GACACATTAT CCAGATATTC ATACCGTTGT TGTTCCTGAT
GTCCCATCCG GACTTGAAAA GGTCGTGTTC GGCTCTGCTG ATGCGTTTCT TGGTGATCTG
GCAACCGCAG CCTATCATAC GGAAAAGTCA GGGTTTACCA ATCTCCAGAT ATCAGGGGAG
GGTTCTTTTG CGAATAATAC CCTGCAGAGC CTTGCCTTTG GGATTCGAAG TGATCAACCG
GTTCTTGTAT CAATACTCAA TAAAGGGCTG CATACTCTCT CTGATGCAGA AAAGAAACGC
ATATTCTCCA CCTGGATACC TGCATCACTC GTCCCGCCCC TGATAAGCCG GGAGATTCTC
ATTGCAGCAG GGGGGATCAT TGCCTTTTTC TGCATCATCA TCGTTGGGTT TTATGTCTGG
AACAGGTCTC TTCAGATGGC GGTCGACGAG AAGACCAGGC AGCTTGTGGC AGAGCTCGAT
GAGCGGAAAA AGATTCAGAA TGAACTCCAG AATAAAAATG ATGAACTATC CGCGGCATAT
GAAGAGATTA CCGCGACGCA GTATGAACTA AAGCAACAGT ATCTGCAGCT GATGCAGAAC
CAGGAGGAAC TCAGGCAGCA GGAACGTACG TTAAGGCAGA TCCGGTTCTC TATTGATCAG
AGCCATGATA TGATGTTCTG GCTTGATATG ACAGGTAAAA TTCGTGATGT CAGCGGAAGT
GTCCACTCTG TTCTTGGATA TTCACATGAG GATCTTGAAT CTTTGGATAT TTCGGCGATA
GATCCAAAAT TTACGATAGA TTCAGGACTT GAAGTCTCCG GATTGGAACA CCCTGTCCCG
GTCAGATATG AGACAGAATT TATAACAAAA AGCGGAAAAT CGCTCATGGT TGAAGTATCG
CTTATCTCCT ATGAATATGC TGACGAGACC ATGATTCTAT TATCAGCCCG TGATATCAGT
GAACGGAAGA TGATGGAAGA CCTGAAGAAA AAGGCATTCA CGCAGATTGA TAAAAATATC
GAGCAGTTTG CAATCTTAAA CGATCAGATA CGAAATCCGC TCACGCTCCT CATGATTTAC
GCAGAAGAGA TGGGTACAAA GGACGAAGCA AAAATCATGG AACAGATATC CAGGATTGAT
CAGCTGGTTG ATAAACTGGA TAAGGGGCTT TTAGAATCAG AAAAGGTCCG GGGGTTTCTC
CGGAGATATT ATGAACACAC ATCTGATACC CGGGAACCAC TTGAGGATAC CTGGTAA
 
Protein sequence
MIGKRNCYQK MKIFLFSSHV RSHLILVLFI VLSGIGICGV NADPSYDTAL SLIPEELEWI 
SAHPVIRICP DPHYPPFEML TSDGGYQGIS ADLLRIIAER AGLTLEVVPC ENWSQCIEKI
RNREVDILGA VFISDLRSGY LSYTDPFYSS PLEIITKNTA PSDLTLADLS GKSVAVVDGY
TSHLLLVTHY PDIHTVVVPD VPSGLEKVVF GSADAFLGDL ATAAYHTEKS GFTNLQISGE
GSFANNTLQS LAFGIRSDQP VLVSILNKGL HTLSDAEKKR IFSTWIPASL VPPLISREIL
IAAGGIIAFF CIIIVGFYVW NRSLQMAVDE KTRQLVAELD ERKKIQNELQ NKNDELSAAY
EEITATQYEL KQQYLQLMQN QEELRQQERT LRQIRFSIDQ SHDMMFWLDM TGKIRDVSGS
VHSVLGYSHE DLESLDISAI DPKFTIDSGL EVSGLEHPVP VRYETEFITK SGKSLMVEVS
LISYEYADET MILLSARDIS ERKMMEDLKK KAFTQIDKNI EQFAILNDQI RNPLTLLMIY
AEEMGTKDEA KIMEQISRID QLVDKLDKGL LESEKVRGFL RRYYEHTSDT REPLEDTW