| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_1413 |
|---|
| Symbol | |
|---|
| ID | 3923556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | + |
|---|
| Start bp | 1612984 |
|---|
| End bp | 1616739 |
|---|
| Gene Length | 3756 bp |
|---|
| Protein Length | 1251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637897045 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_502867 |
|---|
| Protein GI | 88602689 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.629832 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGGCT CACGTGTTGA ATCAGATATC CTTGACCTGT TCAGTAAGGA GAAGAGGTCT
TTTACCATAT CACAAATCGC ACAGTTGACT GGTCATGACA GGAGAACCGT TGCTCATCAC
CTGGCCCTCC TTCATCAGTC CAGAAATCTG GGGATGATTC AGCATGGAGT CAGAAAGAAG
TATTTTGTAC CGGATAATGT CCTTTTGATC TCCCGCAGTC TGTGTGCCCA TATCATTCTG
GTTATCAATC AGGATTATTC AATTCGGTGG ATAAATGATC CCTTTCTGGA AGTTCTGGGA
TGCACACGGA ATGATATTCC TCATATTACC CTGACCCATC TGGAAGAAAT TTTTCCTGCT
ATCAACTTTA AATCGATTTT AAGCCATCTT GTCCATGGTC AGACCCGCTT CATCAAAGAA
TCGTGTGAAT ATAACGGAGA GCAATTTACC TACAGATTCT CCTTTTCAGC GATATACATT
CAGGATGAAC CTCAGTCATT TATCATCACC GGACAGGACA TAACTGAAAA TGAGCGGATA
AAGAGTGAAT ATCAGAAGAA AGAACAATCG TATGAGATTT TAATCAGAAA TATCCCCGGC
ATTGTATTCA GACGGAATAT CCTGTCTAAT ACCATTGAAC TCTTTTCAGA TAAGGTGTAT
TTCATCAATA AATCGATCCC ACTGGATTCA CATCCCTCCT GTATCAGTTT TTTTGATTCA
TTTATTCATC CTGATGACCG GGACCGGCTT ATCGGAGTGT TACAATATGC CGTGTTTCAT
CAGGAAGAGT ACGAAGTTGA ATTCAGGGTG ATTAATTCCC ACGGATATGA GTTTCATTTC
CTTGAACGGG GCAGACCGAT TCTTGATCCA TCAAATAACA CCCAGTATAT TGATGCTATC
ATCATGGACA TTACATCTCT TCGAAAAACT ACAGAACTCC TTGCAGAAAG TGAGGAGAGG
TTTCGAAAAC TGGCCGATGT TGCACCAGTC GGGATTTACA TCACTGATAG CAGCGGAAAT
CTCCAATTTG TAAACCATGA ATGGTGTCGG CAGCATAATA TTACCCAGAA TCATGCAATT
GGAATGCCCT GGACTCAGGG GATCCATCCG GATGATAGAA AACTGTTCTC TGCCGATAAT
TCAGAGTCCT CACAGGCATA CAAGCGGATT ATTTACCGGA CAAACCCGGG GAATGCAGGA
TGTACATGGA TACATGGTAT ATCTGTACCA ATAGAGGATC GTGAAGGGAC GATAACAGGA
TATATCGGGT GTGATACCGA CATCAGCGAA TGGAAACGGA TTTCCTGTGA AGAAAGACCT
TTTGAAGCCA ATGACGCTCT ATTTGATAAC CAGGCCGATA TAAAGCGGGT GATGTATGAT
CTGCAGTTTC ACAAAATTCA GCTCGAACTC ATCAATAATG AACTCGCCCG AACCAGAGAT
GAATTAGAAG AGAGCCTTGC TCATTATATT GAACTCTATG ATAATGCACC GATTGGATAT
TTAAGCCTGA ATCAGAATGG GTTTATTAAA AAGATTAATC TTGCAGGTGC CGCCATTCTG
GGCAAAGAGA GATTGGCAGT TCTGGACACA CCCCTGTACT CGTATATTTC TGAAATCTCT
TCCCAGGTTT TCTGGGACTT CTTTTCACAT CTGTCACCCG GAGAGAGCGA TAACTCCTGT
TTTCTCCATC TGCACCGACC ATTTCATGAT TCGGTAGTTG TGCATGTTAC AGCATCCATC
AATGCATCCG GGAATGAGAT TCATCTGGTT CTCATTGACA TCACTGAAAA ACACAGAGCT
GAATTAAGAC TACGAGAAAG TGAGAAAGCG CTTGCCAGAT CGCAGATGAT AGCCCAGGTC
GGAAGCTGGT ACCTTGACCT CTATTCAGGC CAGATGACCT GGTCTGATGA AGTGTACAGG
CTGTTTGGCA TACCTCCCGG AGATCCTGTA CGGTATGACA CCGTATTTGA GATGATTCAT
CCTGAAGATC AGGCGAAAGT TCAGGCAGCA TATTCAGCGA TCCAGGAAGG TACGGATTTA
AAACAACTGG ATCACCGGAT AATCAGGCAG GATACAGGGG AGGTCAGGTT TGTTCATGAA
TGGTGTGTCC ATGAGCGAAG TCCTGATAAT ACAATAATCA GGACATTCGG GGTGATTCAG
GACATCACCA AACAAAAAGT GGCAGAAGAG AAGATAAAGG AACAGGAGGC ATTTCAGCAA
TTATTGATTC AGCTGGCAAC AAAGGTTATT AATGTCTCAA TAGACAGAAT CGACCCGACG
TTGCAGGAGA TGATGGCAGC CATCGGAAAT TTCACCCATG TTGACCGGGT ATATATCTTT
CATAATGACA ATGAACGGAA GATATCACGG AATACCCATG AGTGGTGTGC TCCAGGGATA
AAACCAGAAA TTGAAAATCT ACAGGCGGTC CCATTTGATT TCTTTCCCGA TATAATGGAT
ATGCTTCAGC AGGGAGGGCC GGCATATATT CCTGACGTGT CAAAGATGGA TCCGTCAGAA
CCGGCACGGG CAATTCTGGA AAGTCAGGGA ATTAAATCAC TTATCCTTCT TCCGTTTATA
CAGGATGGAG ATTGCACTGG TTTTGTCGGG TTTGATGCAG TAAAGGAGAG GAGAAGGTAT
TCTGATACGG AAATTTCACT TCTGAAGGTT TTTGCAGAGA TTATTTCGAA TGTTCTGTCA
AGAGAAGAGA CAGAAAAAGC ACTTCATGAG CATGAAAAAG TACTTGCAAT TACCCAGGAT
ATTGCTCAGA TTGGGAGCTG GAGTCATGAT GCACGGTCCG GTAAGCTTAC CTGGTCAGAT
AAGACCTGTG AAATCTTTCA GGTTGATCCT AAAAATTGTG CTTTTACCTT TGATGCATAT
CTTGAGATGG TGCATCCGGA TGACCGGGAC CTTGTCGCCC GGATATATAC CGAGTCCCGT
GAAAAGGGGT TGGAACGGCA TGAACTTGAA TACCGGATTA TTCAAAGAGA AAGCCGTGAC
ATCAGGTACA TCTATGACCA GGGGATCCAT GAACGTGACA GAGACGGGAC GATAGTCCGG
TCATATGGGA TGATTCAGGA TATTACCAGA AGAAAACTCG CTGAAACTGC TCTGGAAGAG
TCAAACAGGA AATTGCGCAT CCTCACCAGA TTGACCAGAG ATGATGTCAG TTCCATGCTC
AGAGAAATAA GACAGTACCT GGACCTGGCA AAAGAGGAGC ATGATACACA AAAGATTTCC
AGGTATCTGC AAATGGCACG GGATATGAGC TCCATTATAG AAAAGACTTT AGATTTTACC
AGGGACTATG AATTATCAGG GGTATCATAC TCCGGATGGT TGAACCTGTT TCAGACCATA
TCGACCTTAA TACATGCTCT TGCTTCGCAT CAGGTTGTGA TTGAAAACAC TGTTTCGCCG
GTGCTGGAGA TTTATGCTGA CCCGATGATG AGAAATGTAT TCATGATTAT TCTGGAGTAT
GCTCTCAAAA AGGACCGGGG AGTCTCCAGG CTGCGGATCT CTGTCACCAT GTCAGGAAGA
ACACTGATCC TTATCTGTGA AGATAACGGG GCCGGTATCC CGGCGGATGA GAAAGAAATC
ATATTTATGC ATGGGAATTC GAAATATTCA GACACCAGAC TCTTCCTGGT GAGGGAGATT
CTGGGTATCA CCGGTCTTCC GATCAGAGAA TGTGGAGACC CGGAAAAAGG TGTACGGGTT
GAGATCTCTT TTCCTGAAGG CAGGTACCGC ACATGA
|
|---|
| Protein sequence | MPGSRVESDI LDLFSKEKRS FTISQIAQLT GHDRRTVAHH LALLHQSRNL GMIQHGVRKK
YFVPDNVLLI SRSLCAHIIL VINQDYSIRW INDPFLEVLG CTRNDIPHIT LTHLEEIFPA
INFKSILSHL VHGQTRFIKE SCEYNGEQFT YRFSFSAIYI QDEPQSFIIT GQDITENERI
KSEYQKKEQS YEILIRNIPG IVFRRNILSN TIELFSDKVY FINKSIPLDS HPSCISFFDS
FIHPDDRDRL IGVLQYAVFH QEEYEVEFRV INSHGYEFHF LERGRPILDP SNNTQYIDAI
IMDITSLRKT TELLAESEER FRKLADVAPV GIYITDSSGN LQFVNHEWCR QHNITQNHAI
GMPWTQGIHP DDRKLFSADN SESSQAYKRI IYRTNPGNAG CTWIHGISVP IEDREGTITG
YIGCDTDISE WKRISCEERP FEANDALFDN QADIKRVMYD LQFHKIQLEL INNELARTRD
ELEESLAHYI ELYDNAPIGY LSLNQNGFIK KINLAGAAIL GKERLAVLDT PLYSYISEIS
SQVFWDFFSH LSPGESDNSC FLHLHRPFHD SVVVHVTASI NASGNEIHLV LIDITEKHRA
ELRLRESEKA LARSQMIAQV GSWYLDLYSG QMTWSDEVYR LFGIPPGDPV RYDTVFEMIH
PEDQAKVQAA YSAIQEGTDL KQLDHRIIRQ DTGEVRFVHE WCVHERSPDN TIIRTFGVIQ
DITKQKVAEE KIKEQEAFQQ LLIQLATKVI NVSIDRIDPT LQEMMAAIGN FTHVDRVYIF
HNDNERKISR NTHEWCAPGI KPEIENLQAV PFDFFPDIMD MLQQGGPAYI PDVSKMDPSE
PARAILESQG IKSLILLPFI QDGDCTGFVG FDAVKERRRY SDTEISLLKV FAEIISNVLS
REETEKALHE HEKVLAITQD IAQIGSWSHD ARSGKLTWSD KTCEIFQVDP KNCAFTFDAY
LEMVHPDDRD LVARIYTESR EKGLERHELE YRIIQRESRD IRYIYDQGIH ERDRDGTIVR
SYGMIQDITR RKLAETALEE SNRKLRILTR LTRDDVSSML REIRQYLDLA KEEHDTQKIS
RYLQMARDMS SIIEKTLDFT RDYELSGVSY SGWLNLFQTI STLIHALASH QVVIENTVSP
VLEIYADPMM RNVFMIILEY ALKKDRGVSR LRISVTMSGR TLILICEDNG AGIPADEKEI
IFMHGNSKYS DTRLFLVREI LGITGLPIRE CGDPEKGVRV EISFPEGRYR T
|
|---|
| |