| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_1406 |
|---|
| Symbol | |
|---|
| ID | 3923549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | - |
|---|
| Start bp | 1602780 |
|---|
| End bp | 1606055 |
|---|
| Gene Length | 3276 bp |
|---|
| Protein Length | 1091 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637897040 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
|---|
| Protein accession | YP_502862 |
|---|
| Protein GI | 88602684 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.199653 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGGAA AAACTCGAAC CTCAGACATC GCCTCACTTC AGAATATCCT GGATGCGACT
TCTTCCTCAA TCCAGATAAT CGGACCTGAA GGGGTCTACA TTGATTGTAA TGCGGCTACG
TATGCAATGT TTCGTGCCAA TACTGTCGAG GACATCATCG GCAAACCTCC ATCGATCCTC
TCGCCTGAAA AACAAAGGAA TGGGACCGAT TCAAATGAGG GGGCTGCACA ATTCATCCAG
ATGGCATTTT CCGGTGAAGT TGTCAGTTTT GAATGGGAAC ATAAACGGTT AGACGGGTCC
ATATTTCCCT GTCAGGTAAC TCTCCAACTC ATTGAATATG AAGGAAAGAC CTGTCTTATG
GCTACGATTG TTGATATAAC CGATGTTGTC GCGCTCAGGA AAAAATCAGA GTTTATTATC
GCCAATGCCC CGACTCCGAT CATCGATCTC AAACCGGATC TCTCAATAAC GTACGCAAAC
CATGCGTTTG CCGTTCTGAC TGATAAATCC ATCGAAGAAA TTCAGAAGAT GAAAGTTACC
GATTTTGATG TCCGGAACCG GGCAGGCGGA TCCCTTGCTG AAGGGATCGA GACGAAAAGC
CAGGTGCATG GGGATCTGGA CGCGGTGGTT GCCAGTGGGA CTAAACATCT TCAGTATTAT
TACACGCCAT TTTTTGCTGA AGATGGTAAC CTCCTCTCGA TTTTTGCATA TTATATCGAT
AAGACAGAAG AGAAGAATGC AGTCCGTGAT ATTATTGCCC TCACTGAACA GTCTCAGGCT
GGAAGTCTTG ATGCCCGGGT GGATCCGGCA CCGTATTCAG GGGAACTCAA ACTTCTCATG
GAAGGAATCA ATGGGACTTT GGACAGCATC ATTAGTCCAT TGAATGTTGC AGCAGAATAT
GTAGATCGGA TATCAAAAGG CGATCTCCCA CCCCGGATTA CTGAAGAGTA TAACGGGGAT
TTCAATGAGA TTAAAAATAA TCTGAATAAT TGTATCGATG CGATACACCA GCTGATCAGT
GATGCCGGTA TGCTCTCAGT AGCGGCAGTC GAAGGTCGCC TTGAAACACG GGCCGATGTA
ACAAAACACC TGGGAGATTA CCGGAAGATT GTTGAAGGGA TAAATAATTC TCTGGATGCC
GTTATCACAC CGCTTCGGGA TGCCGGGGCT GTTCTTGAAC GGATGGCGGT AAATGACCAT
ACGAAGGCCA TGGATGAATC TGCATACCTG GGTGATTTTG TCTCTCTTGC ATCGAATATT
AATGCTGTCC GTGACCGGGT AAATCACATC GCAGGTTCAA TTGAGAAGAT CAGTCACGGA
GATCTTTCAG AACTTGCAGA GTACCGGCAG ATTGGAAGAC GTTCAGAACA GGATCGTATC
GTTCCTGGTT TTATTAAGGC ATTTGAAAAC CTTCAGGCAT TAACCCGGGA TACAACCATG
CTTGTCGATG CAGCATCGCA GGGTAACTTT AATGTCCGGG CTGATGTGAG CAGGCATGAG
GGTGAATACC GTCGGATTAT TGAAGGAATC AATGCGACAG TCGATACGAT TGCAGATAAG
GTAGCCTGGT TTGAGTCTAT TCTTGATGCA ATCCCATTCC CGGTTTCTGT TACCGACCTG
AACATGAACT GGACATTCCT GAATCCTGCC ACGGCTAAGA TGGCAAACGT AGACAAAAAA
CAGGCTATAG GGACTCAGTG TAACCGGTGG AATGCAAATA TCTGCCGGAC AAAAGATTGC
GGTATTGAGT GTCTCAGGGC AGGGAAGAGA GAAACCTTCT TTGAACAGGA AGGAGGATTT
TTCAAAGTTG ATGTGGGGTA TGTTAAGGAT GCTTCAGGAA AGGATATCGG ACATGTTGAA
GTTATTCAGG ATATAACCGC AATTAAGAAG GTTGAGAAAT ATCTTGATGA ATCGGTTCGG
AATATCTCAT ACTGCCTTGG TATGTTTGCA AATGGAAAGA CCGATTTTGA AGTCCGAATC
CCTGAATCAG ATCAGTATAC TGATGATGTC CGAAAGAAGA TCGTTGATCT GACCGTCAAT
CTTCATCGTG CACGGGATTC CGTGAAAAAC CTGGTCGTTC AGGCAAAAAG TCTTGCGAAA
GGAGCCATTC AGGGAGACCT GAAAAACCGT GCAGATATCA CCCAGGTCAC CGGAGATTTT
GCAGAGGTTC TGAGCGGGAT TAATGATACA CTGGAATCTG TCGTCACCCC GGTCCAGGAA
GCGATTCGTG TCGCAAATGA GTATGCCAAT GCAAATTTCA GTGCACGGGT TGATTCATCC
CTGAAGGTGG CCGGAGACTG GGTCGGATTT AAGACCGCTC TTGACAACAT CGGCATTCAG
ATCTGCGATG CCATCGGAGC GATTAATAAG CAGATCCTTG AACTTGCTTC GAATGCAGAA
GAGGCCACCG CAAGTGTTGA GGAAGTATCT GCCGGTGCAC AACAGATTGC CAGAAATACC
GGGAGTGTCA GTGCCAATGC AGAGCAGGGA GATGACGGAA TAACCCAGGT TCTCAAAGCC
ATGGAGGATC TGACAATAAC CGTCGGTGAG GTTTCACAAC GGGCTGAAAA GGTCTCCCAT
TCTGCAACGG AGGCAAACCA ATTCTCTAAG GAGGGTATAG ATCTTGCGAA AAAGTCTGAG
TCTGCTATGA AGGGAATTAC TGGTTCAACA AGTGAGGTGG ATCAGATTGT TCGTGAGATT
AATCAGCAGA TGGAGGAGAT TGGAAAGATT GTCCGTCTCA TTACAGATAT ATCCAACCAG
ACCAATCTCC TTGCCCTCAA CGCTGCAATT GAGGCTGCAC GGGCCGGAGA AGCTGGTCGG
GGATTTGCTG TTGTTGCTGC GGAAGTAAAG TCCCTTGCCC AGGATTCCCG TGCATCAGCT
GAGAATATAG CGGACATGAT CGCAAATCTG CAGGCAAAGG CAAAGAAGGC AAATGATGCG
ATAATCGCTG CAGGAACTGC GGTTGAAGAC GGGAACCATG CACTCGAAGA AACAGTCAGT
GCCTTTACGA AGATCGCTGA ATCAATTGAG GATATCACCC GGAATGCGAT GGATATGGCG
TCATCATCCG AAGAACAGGC TGCATCGGTT GAAGAGATCA CGGCAAGTGT GAATGAGGTA
TCCGTTCTGA TTCAGGGTAC TGCCAGGGAG GCTCAGGATG CGGCTGCTGC AACCGAAGAG
GCATCGGCTT CGATTGAACA GATTGGCAGG GTTGTTGCAA ATGTGAGTGG GATAGCCGAG
AGTATCTCAA GGGAGATGAC GAAATTTAAA ATTTAA
|
|---|
| Protein sequence | MNGKTRTSDI ASLQNILDAT SSSIQIIGPE GVYIDCNAAT YAMFRANTVE DIIGKPPSIL
SPEKQRNGTD SNEGAAQFIQ MAFSGEVVSF EWEHKRLDGS IFPCQVTLQL IEYEGKTCLM
ATIVDITDVV ALRKKSEFII ANAPTPIIDL KPDLSITYAN HAFAVLTDKS IEEIQKMKVT
DFDVRNRAGG SLAEGIETKS QVHGDLDAVV ASGTKHLQYY YTPFFAEDGN LLSIFAYYID
KTEEKNAVRD IIALTEQSQA GSLDARVDPA PYSGELKLLM EGINGTLDSI ISPLNVAAEY
VDRISKGDLP PRITEEYNGD FNEIKNNLNN CIDAIHQLIS DAGMLSVAAV EGRLETRADV
TKHLGDYRKI VEGINNSLDA VITPLRDAGA VLERMAVNDH TKAMDESAYL GDFVSLASNI
NAVRDRVNHI AGSIEKISHG DLSELAEYRQ IGRRSEQDRI VPGFIKAFEN LQALTRDTTM
LVDAASQGNF NVRADVSRHE GEYRRIIEGI NATVDTIADK VAWFESILDA IPFPVSVTDL
NMNWTFLNPA TAKMANVDKK QAIGTQCNRW NANICRTKDC GIECLRAGKR ETFFEQEGGF
FKVDVGYVKD ASGKDIGHVE VIQDITAIKK VEKYLDESVR NISYCLGMFA NGKTDFEVRI
PESDQYTDDV RKKIVDLTVN LHRARDSVKN LVVQAKSLAK GAIQGDLKNR ADITQVTGDF
AEVLSGINDT LESVVTPVQE AIRVANEYAN ANFSARVDSS LKVAGDWVGF KTALDNIGIQ
ICDAIGAINK QILELASNAE EATASVEEVS AGAQQIARNT GSVSANAEQG DDGITQVLKA
MEDLTITVGE VSQRAEKVSH SATEANQFSK EGIDLAKKSE SAMKGITGST SEVDQIVREI
NQQMEEIGKI VRLITDISNQ TNLLALNAAI EAARAGEAGR GFAVVAAEVK SLAQDSRASA
ENIADMIANL QAKAKKANDA IIAAGTAVED GNHALEETVS AFTKIAESIE DITRNAMDMA
SSSEEQAASV EEITASVNEV SVLIQGTARE AQDAAAATEE ASASIEQIGR VVANVSGIAE
SISREMTKFK I
|
|---|
| |