| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_1000 |
|---|
| Symbol | |
|---|
| ID | 3924560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | - |
|---|
| Start bp | 1125628 |
|---|
| End bp | 1127799 |
|---|
| Gene Length | 2172 bp |
|---|
| Protein Length | 723 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637896638 |
|---|
| Product | Phage/plasmid primase P4-like |
|---|
| Protein accession | YP_502469 |
|---|
| Protein GI | 88602291 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3378] Predicted ATPase |
|---|
| TIGRFAM ID | [TIGR01613] phage/plasmid primase, P4 family, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.760681 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00622147 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAG CGGTAAGCGT TCAGAACCAT TCTGAAGAGG AAACATGCAT CCCTCCTGAA
ATCATGGCTC TTGGTGATAA TATTCGTGTC ATTCCTGTTA AACCGGGTAT AAAGAAACCT
ATCGGGGACA AATGGCAAAA CGAAAACAAT CATCCGCTCG ATTATCGTGG TATCCACTAT
TGGTTTAAAA ACGGCAACAA TTACGGAATT ATACCGCAGG GCGATCTCGT TATTTTAGAC
GCTGATGAAC CGGAAAAGCT CGGAGAGGTC ATTGATTACA TCGGCGATAG CCTCACTGTT
CGGACGCCTT CCGGGGGATA CCACATTTAT TTTTATTGCG CCGAATTGGG CACTAAAAAG
ATAATCCTCT ATGAATTTGA AGAAAATCAC GACGGGAAAA GAAAAAAAGG TCTTCATCTT
GCCGAGATAT ATATGGCTGG TTGTCGTGGC TTCGTGGTTG GCGCAGGAAG CCGAACTGAC
AAAGGGGTTT ATCGTGTTGT AAACGCATCA GCACCTCGGA GACTGCCAGA TCCGGGAGAT
TTTAAGCGTA TAATCAGACC ATTTCGGGAT GACATAAAAT ACGACGATGG CAGTCACAAA
CAAAACCAAA AAGAAAGGGA TTCAATCCCA AAACTCTATA AAAACGAAGT ATATCAAGAC
GGTGAACGAA ACAACGCCTT AATTTCTTTG GCCGGCCGTT TAGTGGGCAC GGGGATCACA
GATGAATCAG AACTGTTTCG GATGCTTTCA GACGCGAATA ATAATCGGTG TATACCAACA
TTGGATGAGG CGGATGTCCA ACGCATAGCC CGAAGTGCCC TTCGATATGA ACCCAACCAG
CGGCGCCCAT TAACCGATTT AGGGAATGGT GAGCGCTTCT TCGATATGCA TGGTGAAACC
ACCAAATTCA TACCAGCATG GCAAAAATGG TTTATCTGGG ATGGTCATTT ATGGCGGGAA
GACCGGAAGC AAGAGATCCG CAAACTTGCC AATAAGACCG TTCGATCGCT GTATGTTGAA
GCCTCAAAAA TCGAAGAGGA CGACTTACGA AAGAAATTGG TTTCTTGGGC TCGGGCATCC
GAAAGCGCAT CTAAAATACA GGCGCTTTTA ACTTCTGCTG CTGCACTGGT CGCTGATGTT
CCTGAATCGT TTGATAATAA GCCAGACTTG TTCAACTTAA AAAATGGAAC ATATAACCTT
CACAGTCATG AATTCAGGGA CCATCTCCAG GCGGATATGC TCACAAAATG TGGCAATTTC
TCATATGAGC CTAATGCTTC TTGTCCTGTT TGGGAAAAGC ACATACAGAC CATATTTTTG
AATGACCAGA GTTTGATTGG TTCATTTCAG GAATTATGTG GATACTCGTT CCTTTCAGGT
AATCCTGATG AAATCTTCGT TATTTGTCAT GGTTCGGGGA GAAATGGCAA AGGCAAAACC
CTTGACCTTC TGAAGCATTT ACACGGCGAT TATGCTAAAA CTGCTGATTT TAAGACGTTC
CTCACTCCGA GTTACACCAA TTCAGGATCA AATCCCAGCC CTGATCTGGC TCGGCTGTAT
CGTTCACGTC TGGTTATCGC ATCTGAAACC GGTAATGGCT CCGTTCTTGA TGAATCGATT
ATAAAACGCC TTTCTGGCAA TGATACCATA TCGGCAAGGT TTCTTCGACA GGAAATATTT
GAGTATACAC CCGAATTTGT AATATTTTTG CAAATGAACC CCATACCACG CTTTAACGAT
TGGGATAAAG CCATTGAGAA TAGGCTTTGG CTGGTGCCAT TCAATCATTA TTTCGAACCA
AAAGACCGCG ATCCGGATAT ACTTGACAAA TTCAAGGCTG AATCGGCAGG TATCTTCTGC
TGGTGCATGG AAGGCCTGAA GCGCTATCAG GCGCTTGGTC GGCTCACCCG GGCTGCTGCA
ATCGAAACGG CTTGTGAATC AGTCCGGAAG GAAAACGACA GTATATCGTG TTTTATTGAA
GATTGTTGCA CCTTAAGCGG TAAAATTTCA AGAAAAGACC TGTATAACCA TTATGCTGTG
TGGTGTGGTG GTGTCGACAT GTGCCCTGAA GTGCCCCGAA AATTCACAAG TGCCCTGCTA
AAAAAACACG GGGTTAAAGA TGGCGTAAAG TCAAACGGAG TTAGATATTT GCAGGGAATT
TCTATCCAGT AA
|
|---|
| Protein sequence | MTEAVSVQNH SEEETCIPPE IMALGDNIRV IPVKPGIKKP IGDKWQNENN HPLDYRGIHY
WFKNGNNYGI IPQGDLVILD ADEPEKLGEV IDYIGDSLTV RTPSGGYHIY FYCAELGTKK
IILYEFEENH DGKRKKGLHL AEIYMAGCRG FVVGAGSRTD KGVYRVVNAS APRRLPDPGD
FKRIIRPFRD DIKYDDGSHK QNQKERDSIP KLYKNEVYQD GERNNALISL AGRLVGTGIT
DESELFRMLS DANNNRCIPT LDEADVQRIA RSALRYEPNQ RRPLTDLGNG ERFFDMHGET
TKFIPAWQKW FIWDGHLWRE DRKQEIRKLA NKTVRSLYVE ASKIEEDDLR KKLVSWARAS
ESASKIQALL TSAAALVADV PESFDNKPDL FNLKNGTYNL HSHEFRDHLQ ADMLTKCGNF
SYEPNASCPV WEKHIQTIFL NDQSLIGSFQ ELCGYSFLSG NPDEIFVICH GSGRNGKGKT
LDLLKHLHGD YAKTADFKTF LTPSYTNSGS NPSPDLARLY RSRLVIASET GNGSVLDESI
IKRLSGNDTI SARFLRQEIF EYTPEFVIFL QMNPIPRFND WDKAIENRLW LVPFNHYFEP
KDRDPDILDK FKAESAGIFC WCMEGLKRYQ ALGRLTRAAA IETACESVRK ENDSISCFIE
DCCTLSGKIS RKDLYNHYAV WCGGVDMCPE VPRKFTSALL KKHGVKDGVK SNGVRYLQGI
SIQ
|
|---|
| |