| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_0656 |
|---|
| Symbol | rpl1P |
|---|
| ID | 3923480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | - |
|---|
| Start bp | 761126 |
|---|
| End bp | 761773 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637896295 |
|---|
| Product | 50S ribosomal protein L1P |
|---|
| Protein accession | YP_502131 |
|---|
| Protein GI | 88601953 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0081] Ribosomal protein L1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.000420977 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.316109 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAGAGA AGAGCGTCCT TATTGACGCA TTGAAAAAGG CAAAAGAACA GGCGCCTGAA
CGGAAATTCA CCGAGAGTGT CGATATGACC ATTAACCTGA AAAATATCGA CATGTCTCAG
CCGAAAAACC GTATTGATGA GACAATCCTC CTTCCCCACG GGAATGGACG AGTAGTCAAG
ATTGCCGTTC TTGGTTCTGG TGACATTGTC ACTCAGGCAC GAGAATCCGG TGTTGAACTC
ATCATGGGAC CGGAAGAAAT TGAGCGCCTT GGAGGTGCCC CTCGTGAAGC ACGTAAAATT
GCATCCGAGC ATCAGTTTTT CCTTGCAGAA ACGCAGGTTA TGAGTCTTGT CGGAAGATGG
CTTGGTCCAC GACTTGGTCC ACGAGGCAGA ATGCCCCAGC CGATTCCCGC CGGTACGGAT
ATCCGTCCAA TCGTGGAGCG TCTTCGGAAA TCTGTCAAAA TCAGAACCAA GGACAAGATG
TCATTCTCAC TCAAGGTAGG AACAACCGCC ATGAGTGAAG AGGAGATTGC AGAGAATATC
GATGCAGTCC TCAAGCGTAT TCTCTCAAAA CTTGAGATGG GTGACTTCCA GGTCAGATCG
GTCTATATAA AGACAACGAT GGGGCCGTCT GTGAAGGTGG AGTTATAA
|
|---|
| Protein sequence | MVEKSVLIDA LKKAKEQAPE RKFTESVDMT INLKNIDMSQ PKNRIDETIL LPHGNGRVVK
IAVLGSGDIV TQARESGVEL IMGPEEIERL GGAPREARKI ASEHQFFLAE TQVMSLVGRW
LGPRLGPRGR MPQPIPAGTD IRPIVERLRK SVKIRTKDKM SFSLKVGTTA MSEEEIAENI
DAVLKRILSK LEMGDFQVRS VYIKTTMGPS VKVEL
|
|---|
| |