| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_0423 |
|---|
| Symbol | |
|---|
| ID | 3923986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | + |
|---|
| Start bp | 480850 |
|---|
| End bp | 484137 |
|---|
| Gene Length | 3288 bp |
|---|
| Protein Length | 1095 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637896064 |
|---|
| Product | PKD |
|---|
| Protein accession | YP_501906 |
|---|
| Protein GI | 88601728 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3291] FOG: PKD repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.48667 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG ACAAATTAAT CGATTTTAAG AAAGGTCTGT TCGCACTCAT GGTGCTCTGT
GGTATAGGCA TTCTCCTTAT ACCGCAAGTA TCGGCCGCAG GGATTAATAT TAATGTTCCG
ATTGTAGAAC AGAATACCAC GGTTTTCATT GGTGAAGAAG GGCTTGATAT ATCAAATGCG
CTGATAGATC CAAACACTGG AAACCCGGTA TATCTCCTCG GATGGTGGGG GGATGATGTT
GAATCTGGTG GACATACATC AGCAGATAAA TATATCACGA TCGCTCCGGG GAGTGTGACC
AACTATTATG TCAACCCGAC TGAGTATATG ATGAATAATC GATACACAGA GGGTTCTTTT
TATATCTGTG ATGAGACTAC TGGTCAGGCT ATTTATTATA ATGGATACCC TGTTGTCGCT
TTTTATGTAG AGTTACCTCA TCTTGAACTC GTTCCGGCTG ATGATGTATG TCCTGATGTA
AACCGGACCG GGCAGGTCTT CCTTGGAACA AATCTGAACT TTAACATTAA GACCAACCTG
TACAAGATTC AGAACAGGCC TGGAGGTCAG AACAGCGCGA TATTTGATAT CAATGTCATC
GGACCGAATG GAAAGGATTA CAACTACCTC CTCGGTCCTG ATGCCGGAGG GTGTAACTGT
CCGGATTGTA ATCCGAATTA TCCGGCAATA GGTATCAAGG ATATCAATAT TCTGACCAAC
AAGCATCAGT GGCAGACTTG GGATACCGAT GCAATCGATC CACAAACCGG TCTTTTGTAT
TCACCTCAGG GAACATATGC CATATCGGCA ACCTGCTGGG CAAATCACAT ATTAGACAAT
TACGTAACAA TAGGTGGGGC AAAATCAGCC ACAACAAATC TGGAACTGGT TGTAGAGACC
GTGAGTGTTA CGGTAAATCC TGGGACCATT CTAAGAACCG AAACGGCAAC TGCCACGGTG
ACGGGGAAAC CACAGACTGA GTACATCATC GCTCTCATGG AATGTCCTCT TAAGATGACC
GGTGAGATCT GTGACCGCCC GCCATGGTTT GAGAATGATC CACTTAATGT TGCGTTGCAG
TTTGATCCTG AAGGCGGTCC ATATACCATA GGAAAAGAAA TTGTCTATCC GTCCTGTTGT
GATGGGCTAA CCTTCAGAGA TGTCGTGCCA AAGGTATACC ATGACGGTGT GCTCTATTAT
GCAAGTATTA CCACTGACTG TCTTGGAAAA GCAACGATAG ACATCAAAGT GGATAATACG
GTCTGGAAAG CGGATAATAA CCCTGTATAT ACGATCCATG TTCAGAAACG TGCTCCCGAA
TGTAATGGAA TTCACCTGTT TGCGGAGACT GAATTAACTG TTAAAAAGGG TGATATTTCC
ATCCAGATCT CACAGGCATC AGATACAACA AATGCACCCA TCACTGAGGC ATATCTTGGT
GATACCCTCA AGATCGCTGG ATCAAATACC GACAGTCTGA GAACCTATCT GTACATGACC
GGTCCATGTC AGCCTGAATG TGGTGGAGGC CTGATACCGA TTCCATATCC ACATGGACCA
ATTGGAGATG GACCTGAAGT CATTGATGTA AGTCTTCCAC CCATCGAAGG ATTTGACTGG
ATATTTACCA ACAATGATGC CACTGGAAAG CCACGGTACT GGGAGACCAG ATACCTGCCT
ATGAATCCAG GGACCTATAC CATATGGGCG ATTAGTAACT GGCCGCCAAA CTGTCCAAAT
TGTCTTGATT GCGGTGGTCA TCCGTGCTTT ACAAACCCGG AGACTTGTCC TGGATGTGAT
GGAAAGGTAT GTTCACTCCT TGATTGCCCG AACTGTGATG TGTATGCCGT TGCAACTATC
GAACTGAAGG CTCCTGAACT TACCGCGATT ACTGAGGATA TTGAGCGGTG CTGTTGCTCA
GGATATCCCT GTGGAACCAC CATCGATAGT CATCCTATCA ACGTTAGTGG AGTTTCAACC
GGAAATCCGA AGAAAGAGCT GAATGTCTGG CTCTTTGGCA AAGGAAAGAT CGGCGACGAG
AAGTTCATGA ACATAAAAGT GCCTGTCAAT TGTGACGGGA CGTTTGTATT TGATGTGGTG
AAAGATATTC TCGGATATTA TGGTATTCCA TTGTGCAGAA TAGATTCAGG TACCTATGAT
CTGATCATTC AGGATGCAGG ATATAATCAT CAGTATGATG TCATCTATGA GGATGATCTT
GATCCTTCAA TATGGGCCAG ACCTGTGGAA GTGAACAAAA AATGGATCAT CATGGGTCAT
CCAGACATCG GTCCGGTAGA GAATTATTCA GAGATTAATC CTGGAGAACA AAATCCAAAT
GAAGATTTCC TTACTCATGT GGATACAACA ACTTTAGTTG TTCCCGATCC AGACTCCCAG
AAGTTCTACG ACGACGACTG GCGTAAACTC GTCCAGGTAG AAGGACCGGG GTACAAGCTC
GGAACTGAAG TCCTCTATGC TCTCATCAAG GGCCTTGACG ATCCAAGCGT TGACGACAAC
TATGTCCACA TCCAGTTCAC CGTCACAGAC AAATCCTGTC TGGTTGGAAC TGACTTTGAT
GCAGATCGGA CTTACGGAAA CAAACCGCTG ACCGTCCGGT TCACTGACAA GAGTTACAAT
GCAACATCAT GGCTCTGGAA CTTTGGAGAT GGAACAACCT CCACTGAACA GAACCCAACA
CACACCTTCA CTGAAGAAGG CCGGTATACA ATCAGCCTTA CCACCAATGG TGATGAGAAG
GGTAAAGCAG TAAAGAACGA TTACATCCGG GTAGCAAAAG GCCCGACTGC AAAGTTCGCC
TTTGCACCAA AAGATGTAAC GGTAGGAACT GAAGTTCAGT TCACTGACCT CTCGTCAGGT
AACCCGACCT CCTGGATGTG GCACTTTGGT GATGGTTCAT CCTCACCACT CCAGAGTCCG
GTGTATACCT ACATGGCCCC TGGTGTGTAT ACTGTCATGC TCACGGTGAG TGATGAAACC
GGAATCAGTG GTGACTCTGC AACCCAGACC ATCACAGTCC AGGGTTCATC AACCCCGGTC
GTTGCGGATT TCAAAACCGA AGTAACCAAT GGAACCAATG TCCAGTTCAC TGACCTCTCT
TCAGGTTTTG GCATAACAAG CTGGGTCTGG GACTTTGGTG ATGGATCGAC CTCAACTGAG
AGAAATCCGA AGCATACCTA CCTTAAGGAA GGAACCTATC AGGTCTCTCT CACCGTCTCG
AATGGCAGCT ATGAAAACAC TGCCAAAAAA CCCATTGGAA TTCGTTAA
|
|---|
| Protein sequence | MKKDKLIDFK KGLFALMVLC GIGILLIPQV SAAGININVP IVEQNTTVFI GEEGLDISNA
LIDPNTGNPV YLLGWWGDDV ESGGHTSADK YITIAPGSVT NYYVNPTEYM MNNRYTEGSF
YICDETTGQA IYYNGYPVVA FYVELPHLEL VPADDVCPDV NRTGQVFLGT NLNFNIKTNL
YKIQNRPGGQ NSAIFDINVI GPNGKDYNYL LGPDAGGCNC PDCNPNYPAI GIKDINILTN
KHQWQTWDTD AIDPQTGLLY SPQGTYAISA TCWANHILDN YVTIGGAKSA TTNLELVVET
VSVTVNPGTI LRTETATATV TGKPQTEYII ALMECPLKMT GEICDRPPWF ENDPLNVALQ
FDPEGGPYTI GKEIVYPSCC DGLTFRDVVP KVYHDGVLYY ASITTDCLGK ATIDIKVDNT
VWKADNNPVY TIHVQKRAPE CNGIHLFAET ELTVKKGDIS IQISQASDTT NAPITEAYLG
DTLKIAGSNT DSLRTYLYMT GPCQPECGGG LIPIPYPHGP IGDGPEVIDV SLPPIEGFDW
IFTNNDATGK PRYWETRYLP MNPGTYTIWA ISNWPPNCPN CLDCGGHPCF TNPETCPGCD
GKVCSLLDCP NCDVYAVATI ELKAPELTAI TEDIERCCCS GYPCGTTIDS HPINVSGVST
GNPKKELNVW LFGKGKIGDE KFMNIKVPVN CDGTFVFDVV KDILGYYGIP LCRIDSGTYD
LIIQDAGYNH QYDVIYEDDL DPSIWARPVE VNKKWIIMGH PDIGPVENYS EINPGEQNPN
EDFLTHVDTT TLVVPDPDSQ KFYDDDWRKL VQVEGPGYKL GTEVLYALIK GLDDPSVDDN
YVHIQFTVTD KSCLVGTDFD ADRTYGNKPL TVRFTDKSYN ATSWLWNFGD GTTSTEQNPT
HTFTEEGRYT ISLTTNGDEK GKAVKNDYIR VAKGPTAKFA FAPKDVTVGT EVQFTDLSSG
NPTSWMWHFG DGSSSPLQSP VYTYMAPGVY TVMLTVSDET GISGDSATQT ITVQGSSTPV
VADFKTEVTN GTNVQFTDLS SGFGITSWVW DFGDGSTSTE RNPKHTYLKE GTYQVSLTVS
NGSYENTAKK PIGIR
|
|---|
| |