Gene Saro_3329 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_3329 
Symbol 
ID3915976 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand
Start bp3548577 
End bp3550715 
Gene Length2139 bp 
Protein Length712 aa 
Translation table11 
GC content67% 
IMG OID640446114 
Productpenicillin-binding protein 1A 
Protein accessionYP_498598 
Protein GI87201341 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCAGAC GGGACATTCC CCGCCGCCCC GAAGGCGGCA GGTCCGCTCC GCAACCCTCC 
GGTCCCTCGG CGCTTCGCCG CTGGGTGGGA AGGCTGTTTG CCTGGGGCAT CGGATTCGCG
CTGCTTGGCG CCATAGCGCT GATAGTGGCC GTCGCGGTCA CCGCGCGCTC GCTGCCCGGC
TACCAGGAGC TGAAGTCCAG CCAGACCGGG CAGATGGTGG TCGTGCGGGC CGCCGACGGT
TCCGAAATCG TGACGCTCGG CCCCAGCTAC GGCAAGTGGG TTCCCTATGA GCGCATCCCC
GAGGTGATGA AGGACGCCAT GACCTCGGTC GAGGACAGGC GCTTCCGCAG CCACTGGGGC
GTGGACCCGA TCGGGATCGT GCGATCGCTG ATGGTGCGCG TGGAGAGCGG CTACTGGAAG
CAGGGCGGCT CGACCATCAC ACAGCAGCTT GCCCGCAACA TCTTCCTCAA CAATACCAAG
ACCTTCGGCC GCAAGGCGCG GGAATGGGTG CTGGCGCTGG CGCTGGAGCA GAAGTTCTCG
AAGGACCAGA TCCTCGAGCT GTACCTCAAC AAGGTCTACT TCGGCGGCGG CGCCTATGGC
ATCGATTCGG CCGCACGCAA GTTCTTCGGC CATTCGGGCG AGGAGATCAC CCTGCCCGAG
GCCGCGATCA TCGCCGGCCT GGTCAAGGCA CCGTCCCGCT ATTCGCCCAC GGCCGATGCC
GATGCCGCCG TCGGTCGCGC CGGCGTGGTG CTGCAGACGA TGCAGGACAA CGGCGTGCTG
ACCGCGCAGG AAGCCGCCGC CGTCGACCTC AGGAAGGTCA AGATGGTGGA GGACCGCGCC
AGCCAGAACT CGGCGCGCTA CTTCACCGAC TGGGCGTTGC CGCAACTCGA CCTGATCCTG
CCCGAGAACG ACCAGCCGAT CGAGGTTTGG ACCACGCTCG ATCCGGTGAT GCAGCGCGCC
GCGACGAGCG CCATTGCCGG CTTCGCGCCG AAGGGCGCGC AAGGCGCGCT TGTCTCGGTG
GACCGCGACG GCGCCGTCCT CGCGATGGTC GGCGGGACCG ACTACGTCAG CTCGAACTAC
AACCGCGCGG TAAACGCCGT CCGCCAGCCG GGTTCGGCGT GGAAGCTGTT CGTCTACCTC
GCCGCGCTCG AGGCCGGATA TACCCCCGAC GACCGCGTGG TCGACGAGCC GGTGACGATC
GACGGCTGGA CGCCGCGCAA CGACGGCGCG CGCTATGCTG GCGAGATCGA CCTGCGCACC
GCATTTGCCT ATTCCAAGAA CACCGTTGCA GCACAACTCG GCAACGAGGT GGGCTTCGGC
GCGGTGGCCA ACATGGCACG GCGCTTCGGC ATCACCACGC CGATCAACAC CTTGCCCTCG
ATGGTCCTTG GATCGTCGGA AGTTCGGGTG ATCGACATGG TCCGCGCCTT CGCCTCGGTC
CAGGCCAAGG GCAATTCGGT GACCCCCTAT GGCATCCGCA AGGTGACGAC GACCGATGGC
GAAGTGCTCT ACAAGCACCG CGCCGATGCC TCGCAGCAGC TCGTCCCGCC CTATGTCGCG
GCGGGCATGA CCGATCTCAT GCAGACCGCG GTGAATATCG GCACTGGCCG CGCCGCGCAG
ATCGGACGAC CCGTCGCAGG CAAGACCGGC ACCACCTCTT CCAACAAGGA CGGCTGGTTC
CTCGGTTTCT CCAGTGGCAT CACCACGGGC GTATGGATGG GCCGTGACGA TGCCAAGCCG
GTGCCCGGCC TCCAGGGCGG CGCCGCGCCC GCGCGCGCAT TCGCTGCCTA CATGAAGGTC
GCCACGGCCA AGCGCCCGTC CGAAAAGTTC GATACCGAAC TCAAGCTGCC GCAATGGCAG
CTCGAACCCG ACGACGAGGC GATGCAGGGC AATCCCGACG ATTACTTCTA TGTCGACGAA
CAGGGCAACC TTGTGGACCC GTCACGTCGC CCATCGCCCG GCGCCAATCC CGACGCCGTC
GATCCGGATG CGCTGCCCGA AGGCGTGCCC CCGGATGCGC CCCAGGCGGC GACCGACGAT
TTCCTCAACC GCGCCACGGG GCGGCAGGGA GACACGCCAC CCGCGACAGG ACCGCGCACC
CGTCCGACGA GCAGCGCCCG GACGGTGACC GTTCCCTGA
 
Protein sequence
MARRDIPRRP EGGRSAPQPS GPSALRRWVG RLFAWGIGFA LLGAIALIVA VAVTARSLPG 
YQELKSSQTG QMVVVRAADG SEIVTLGPSY GKWVPYERIP EVMKDAMTSV EDRRFRSHWG
VDPIGIVRSL MVRVESGYWK QGGSTITQQL ARNIFLNNTK TFGRKAREWV LALALEQKFS
KDQILELYLN KVYFGGGAYG IDSAARKFFG HSGEEITLPE AAIIAGLVKA PSRYSPTADA
DAAVGRAGVV LQTMQDNGVL TAQEAAAVDL RKVKMVEDRA SQNSARYFTD WALPQLDLIL
PENDQPIEVW TTLDPVMQRA ATSAIAGFAP KGAQGALVSV DRDGAVLAMV GGTDYVSSNY
NRAVNAVRQP GSAWKLFVYL AALEAGYTPD DRVVDEPVTI DGWTPRNDGA RYAGEIDLRT
AFAYSKNTVA AQLGNEVGFG AVANMARRFG ITTPINTLPS MVLGSSEVRV IDMVRAFASV
QAKGNSVTPY GIRKVTTTDG EVLYKHRADA SQQLVPPYVA AGMTDLMQTA VNIGTGRAAQ
IGRPVAGKTG TTSSNKDGWF LGFSSGITTG VWMGRDDAKP VPGLQGGAAP ARAFAAYMKV
ATAKRPSEKF DTELKLPQWQ LEPDDEAMQG NPDDYFYVDE QGNLVDPSRR PSPGANPDAV
DPDALPEGVP PDAPQAATDD FLNRATGRQG DTPPATGPRT RPTSSARTVT VP