Gene Saro_3272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_3272 
Symbol 
ID3917531 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand
Start bp3493098 
End bp3493721 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content67% 
IMG OID640446057 
ProductHAD family hydrolase 
Protein accessionYP_498541 
Protein GI87201284 
COG category[R] General function prediction only 
COG ID[COG1011] Predicted hydrolase (HAD superfamily) 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGAACCG CAGGGGAAAC CATGGTGGAA GCCGTCGTCT GGGACATCGG GCGGGTGCTG 
GTCGAGTTCG ACCTTGCCGG AATCTACCAC GATGCGATCC CCGATCCGGC AGAGCGGGCC
CGTTTCGTCA CGGAAGTGGT GACCGAGGAA TGGCACCTCC AGCACGATCT GGGCGTCTCC
TTCGCCGAAA TGGTCGCCGC GCGCACGTCC GAATTTCCCC AGCACGCCGA TCTGATCGCC
CGCTACGCCA GCCACTGGCT CGACAGCCTG CCTGGGCCTG TGCCGGGCAC GCACGATCTC
GTCGCGCGCC TCGCCGCGCG AGCGGTGCCG CAATACGCGA TCACCAATTT CGGGGCCGAC
GCCTGGGCTC TGTTCCAGCC CACGTTCCCG GTTCTCGATC ACATGCGCGA AATCGTTGTC
TCCGGGATCG AGAAGCGCGC AAAGCCGGGC GAGGAGATCT TTCACCTCGC CGCCCGCCGC
TTCGGTCACG ATCCCGCCGC GATGCTGTTC GTCGACGACA ATGCCGCCAA CATCGCCACT
GCCCGCCGTC TCGGCTGGCA GGTCCATCAC TTCGCCGGCG CGGCAGCGCT CGAAGCAGCG
CTTGCGGCCG AGGGGCTGCT CTAG
 
Protein sequence
MGTAGETMVE AVVWDIGRVL VEFDLAGIYH DAIPDPAERA RFVTEVVTEE WHLQHDLGVS 
FAEMVAARTS EFPQHADLIA RYASHWLDSL PGPVPGTHDL VARLAARAVP QYAITNFGAD
AWALFQPTFP VLDHMREIVV SGIEKRAKPG EEIFHLAARR FGHDPAAMLF VDDNAANIAT
ARRLGWQVHH FAGAAALEAA LAAEGLL