Gene Saro_3251 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_3251 
Symbol 
ID3917509 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand- 
Start bp3471052 
End bp3471669 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content65% 
IMG OID640446035 
Product3'-5' exonuclease 
Protein accessionYP_498520 
Protein GI87201263 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGTTT TCCTGCATGA AGAAGACCTG CCCGAAGGCG CTCTGGCGCC CGGCGCAGTG 
GCAGTCGATA CCGAGACGAT GGGGCTGATC ACGCCGCGCG ACCGTCTTTG CGTGGTCCAG 
ATATCGGACG GGCGCGGAGA CGAGCATCTC GTCCGCTTCT CTCCCGGCAG CGCGTTCGCG 
GCACCGAATC TCAAGGCGGT ACTCGCCGAT CCGGAGCGCC TGAAGCTCTA TCATTTCGCG 
CGCTTCGACC TGGCGGCGAT CGAGCACTAC CTCGGCGTTG TGGCCGCACC CGTGTTCTGC 
ACCAAGATCG CATCCAAGCT GGTGCGTACC TATACCGACC GCCATGGCCT GAAGGACCTT 
GTGCGCGAAC TGTTGGGCAA GGAAATCTCC AAGCAGCAGC AGTCGAGCGA CTGGGGCGCG 
CCGACGCTGA CCGATGCGCA GCAGGAATAC GCCGCGTCCG ACGTGCGGCA CCTGCACGCG 
ATGCACACCA TCCTGGTGGA ACGGCTTGAG CGCGAGGGCC GCACTGCAAT GGCGCAGGCC 
TGTTTCGACT TCCTGCCGAT GCGCGCGCGC CTCGATCTCG CCGGCTGGGC CGAGCGCGAC 
ATCTTCAGCC ACGAGTAA
 
Protein sequence
MAVFLHEEDL PEGALAPGAV AVDTETMGLI TPRDRLCVVQ ISDGRGDEHL VRFSPGSAFA 
APNLKAVLAD PERLKLYHFA RFDLAAIEHY LGVVAAPVFC TKIASKLVRT YTDRHGLKDL 
VRELLGKEIS KQQQSSDWGA PTLTDAQQEY AASDVRHLHA MHTILVERLE REGRTAMAQA 
CFDFLPMRAR LDLAGWAERD IFSHE