Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_3147 |
Symbol | |
ID | 3918189 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_007794 |
Strand | + |
Start bp | 3356399 |
End bp | 3358726 |
Gene Length | 2328 bp |
Protein Length | 775 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640445931 |
Product | TonB-dependent receptor |
Protein accession | YP_498416 |
Protein GI | 87201159 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.774521 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCGTA TGTCCACGCG CGCCGTTCTG GCCGCATCTG CCGCGCTGTT CGCGCTGCCT GCCGTCCCCG CCATTGCGCA GGAAGCACCG GCTGACGAAA CCACCGCCTC GAACGAGATC ACCGTCATCG CCCGCCGCCG CGAGGAGCGC CTGCTCGACG TGCCGATCGC GATCTCCGCG CTCAGCACCG AAGCGCTCGA CAAGGCCGGC GCCAAGGATC TCTCCGGCGT CCAGGGCGCG ATCCCCAACG TCAACATCGT GCAGGGCCGC GGCTCGGCCA GCAGCGCCAA CTTCTACATC CGCGGCATCG GCCAGCCGGA CGCGCTGCAG ACCTTCGACC CGGCTGTCGG CGTCTATGTC GACGGCGTTT ACCTCAGCCG CATCCAGGGT GCGCTGCTCA ACCTGTTTGA CGTCCAGCGC GTCGAAGTCC TGCGCGGGCC GCAGGGCACG CTCTATGGCA AGAACACCAT CGGCGGCGCG GTCAACGTCG TCTCGAAGAA GCCCGACCTC AACGACTTGC GCGGCGAAGC GTCGATCACC TACGGCCGCT TCGACGAAGT GACCGCCAAG GGCTACGTCT CGGCCCCGCT TGTCGCGGAC AAGCTCGCCC TCTCGGTCGC GGGGGTCTAC GACGACCGCG ACGGCATCGT CACCGATCCC GCCACCGGCC GGAAGTACAA CGACCGCAAC AACCTCTCGG GCCGCGCAAT CCTTCGCGCC CAGCCGACCG ACACCGTCGA GGTCCTGATC TCGGGCGATT ACACCCGCCA GCGCAACTCG CTGACCATGG GCCAGGCGAC CGCCCCGCTG ATCGGGTTCG ACTACAACGC CGACTTCAGC GCCGTCACGC CCTTCGTGAT CGCGCCCGCC GCCACCGGCG AATGGGACTA CAAGGCCTCC AGCAGCTTTG CCGGCGACAA GGGCCAGAAG CTCGACCACT GGGGCGTTTC GGGCACGATC AACGTCGACC TGTCCGATAC CCTGCAACTC GTCTCGATCA GCGCCTACCG CAAGCTCAAG ACCGACTTCT TCGTCGACAT CGACGCAACC ACCGCCGAAG TGGGCGACGT CTTCGTCGGC ACCCGCCAGC ACCAGTTCAG CCAGGAACTC CAGCTCAAGC TCGATGCCGA CAAGCTCAAG GGCGTGCTCG GAGTCTACTA CCTGAACGAG CACGTGACCT CGCACCAGGA AGCCTATGCC GACAGCTACC TGCGCTATGT CGGCACGCCG CTCAACTTCC TGCGCACCAT CGATGACGAG CAGGACACCA AGTCCTACGC CGCCTTCGGC CAGCTTACCT ACGACTTCAC CGATGCGGTC TCGCTGACCG GCGGCCTGCG CTACACGCGC GAGACGAAGG AATACTTCCG CACCACCACG GCCACCACGT CGAGCCCGAT CTTCCCGGCC CTGGTCATCA AGGGCACCTT CACCTTCCCG ACCAACCTGC CCGCCCCCTA CAACACGCTC GACAGCGTGA CCTACGAGGC GTGGACCCCC TCGGCGACGC TCAGCTACAA GCCCTCGCGC AACACGATGC TCTACGGCTC GGTCAGCCGC GGCTTCAAGT CGGGCGGCTT CAACGGGCGC GTCAACGGGC TCGGCGACGT CACCCAGGTG GTCGACGGCA CGACCGTCGT CGTACCGACC TTCAAGCCTG AAACCGTGTG GACCTACGAA GTCGGCGCCA AGGGCTCGTT CCTCGACGGG CGCGTGAACA TCTCGGGCGC GGCGTTCTAT TCCGACTACG CGAACTTCCA GGCGCGCGTC GGCGGCGGCA ACACCGGCAT CAACGGCGGC AGCTTCCCCG TGCTCAACGC CGGCAAGCTG CGCATCCAGG GCTTCGAGTT CGACGTCAAC GTGCGGCCCG CCGATCCGGT CACGCTGTTC GCCTCGGTCG GCTATCTCGA TGCCGACTAC AAGGAGTTCA ACGACGGCCG CCGGGCGCCC GCGTTCTCGT GCAACCCGAC TGGCGCGAAG GTGACCTGCA AGCCCGCCTT CGCCCCGCCG CTTACCCTTC GCGCGGGCGG CGAATACCGC GTGCCGCTGG GCGATGCGAC GCTGAGCCTG GGCGGCGACG TCCGCTTCGT CGACAAGCAT TACCTGTCGG TCGACAACCG CCCCGGCCTC ACCGAAGACG GCTACCTGAT CGGCAACCTC TATGCCCAGG TGGACTTCGA CAAGTTCTAC CTGCGCGGCG CGGTCCGGAA CGTAGGCAAC ACGCTCTACA AGACCGACGG GCAGGAATTC AGCTCGGTCG GCAACATCCA GACCGTCTAC TATGGCGACC CGCGCACGTG GAACGTCACG CTCGGCGTCC GCTTCTGA
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Protein sequence | MTRMSTRAVL AASAALFALP AVPAIAQEAP ADETTASNEI TVIARRREER LLDVPIAISA LSTEALDKAG AKDLSGVQGA IPNVNIVQGR GSASSANFYI RGIGQPDALQ TFDPAVGVYV DGVYLSRIQG ALLNLFDVQR VEVLRGPQGT LYGKNTIGGA VNVVSKKPDL NDLRGEASIT YGRFDEVTAK GYVSAPLVAD KLALSVAGVY DDRDGIVTDP ATGRKYNDRN NLSGRAILRA QPTDTVEVLI SGDYTRQRNS LTMGQATAPL IGFDYNADFS AVTPFVIAPA ATGEWDYKAS SSFAGDKGQK LDHWGVSGTI NVDLSDTLQL VSISAYRKLK TDFFVDIDAT TAEVGDVFVG TRQHQFSQEL QLKLDADKLK GVLGVYYLNE HVTSHQEAYA DSYLRYVGTP LNFLRTIDDE QDTKSYAAFG QLTYDFTDAV SLTGGLRYTR ETKEYFRTTT ATTSSPIFPA LVIKGTFTFP TNLPAPYNTL DSVTYEAWTP SATLSYKPSR NTMLYGSVSR GFKSGGFNGR VNGLGDVTQV VDGTTVVVPT FKPETVWTYE VGAKGSFLDG RVNISGAAFY SDYANFQARV GGGNTGINGG SFPVLNAGKL RIQGFEFDVN VRPADPVTLF ASVGYLDADY KEFNDGRRAP AFSCNPTGAK VTCKPAFAPP LTLRAGGEYR VPLGDATLSL GGDVRFVDKH YLSVDNRPGL TEDGYLIGNL YAQVDFDKFY LRGAVRNVGN TLYKTDGQEF SSVGNIQTVY YGDPRTWNVT LGVRF
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