Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_3060 |
Symbol | |
ID | 3916674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_007794 |
Strand | - |
Start bp | 3277719 |
End bp | 3279596 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640445842 |
Product | signal peptide peptidase SppA, 67K type |
Protein accession | YP_498329 |
Protein GI | 87201072 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type [TIGR00706] signal peptide peptidase SppA, 36K type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCTTTG CCCGTTCCGT GTGGAAGATC CTCGTCGCCA TCAAGGACGG TCTCGTCCTC CTGTTCCTGC TGCTGTTCTT TGCGGGCCTA TATGCCGTGC TCGCGATGCG CCCCGCGCCC GGCATGGTGC GCGAAGGGGC GCTCTACCTG CCGCTCGAAG GCCGCGTAGT GGAAGAGGCG ACCGAAATCT CGCCCGCCGA CTTCCTGACC GGCCAGACCC CGGCGCCGGA ATATGTCGAA CGCGACCTGA CCCGTGCGAT CGAGGCTGCC GCCACGGACA AGCGCATCAA GGCCGTGGTA CTCGATCTCG AATCCTTCGG CGGCGGCTCT GCCGTCCATC TTTCAAGCAT CGGCGCCGCG ATGGACAGGG TCCGCGCCGC CAGGAAGCCG GTCTTCGTTC GCTCGCTCAT CTATACCGAC GATGCGATGC AACTGGCCGC ACATGCGTCG GAAGCGTGGG TCGATCCGAT GGGCGGCGTC GCGATCACCG GGCCGGGCGG CACGATGCTG TTCTATAAGG GGCTGATCGA CAAGCTGAAG GCCAACGTCC ACATCTTCAA GGTCGGCACC TACAAGAGCG CGGTCGAACC CTACATGCGC GCGCAATCCT CGCCCGAGGC GCGCGAGGCG ATGCAGGCGG TCTATGGCGC GATCTGGCAG AACTGGCAGG ACGAAGTGCG CAAGGCCCGG CCCAAGGCCG ACCTTGCCCT CGCGACGACC GACCCGGCGA AGTGGGTCGC AGACAATGGC GGCGATGCCG CGCAGGCCGC GCTGAAATCC GGCCTCATCG ACCGCGTCGG TGACCGCATC GCTTTCGGTA AGCGCGTGGC CGAGGTTGTC GGCGCGGACG ATCAGGGACC GCTGGGTTCG TTCAAGGCGA CCGAGCTTCC TGTCTATCTG GCCGACAAGC CCGCCGCCAA GGACGGCAGT GCTATCGCGG TGGTGACCGT GGCCGGCGAG ATCGTCGATG GTGATGCCGG ACCCGGCGTT GCGGGCGGCG ACCGTATCGC GGACCTCATC GACGGCGTGA CACAGGCCGA CGACTACGCC GGCCTCGTGC TGCGCGTCGA TTCGCCCGGC GGCTCGGTCA TGGCCTCGGA ACGCATCCGG GCGGCGGTGG AGCGGGTCAG GGCCAAGGGC CTGCCGGTGG CGGTTTCGAT GGGCAGCGTC GCGGCCAGCG GCGGCTACTG GGTTTCGACG CCCGCGCAGC GCATCTTTGC AGAGCCCAGC ACGATCACTG GTTCGATCGG CGTGTTCGCC GTCCTGCCGA CGTTCGAGCA GACCCTGCCG CAGTATGGGG TGACGACCGA ACAGGTCCGC ACCACCCCGC TTTCCGGCCA GCCCGATCTC CTCGGTGGTC TCAACCCTCA GGTCTCGGCG CTCATGCAGG GGCAGGTCGA ACAGACCTAC ACCCGCTTCC TCGGCCTCGT CGCCAAGGCG CGCGGCAAAT CCCCTGCCGA CATCGACAGG ATCGCGCAGG GACGCATCTG GGACGGCGGT ACTGCACGCC AATTGGGCCT GGTCGACCAG TTCGGCGGGC TGGACGACGC GGTCGCATGG GTCGCCAAGC AGGCCAAGGC CGACAAGTGG CACGCCGAAT ACGTCGAGGA CGAACCCAGC CCTGTCGCCC AGTTCCTCCG CCAGATGGAA ACCGGCGAGG CACCCGAGGC AAGAGCGCAC GATCTTGCAG GCGCGCTGGC AGCGCAGCAG CAGGGCCTTG TCGCGCGCAT GCAGGCGGAC CTGCTGCGGC TGATCGAAGG CGGCGGGATC AAGGCTTATT GCCTGGAGTG TGCAAGCGAT GATCGGGGCA CCGCGAATAT GCGGCAGCGG AAGGCCGATT TGGGGCTTCT GGCCTGGCTC GGACGGCTGG TTGCCTGA
|
Protein sequence | MSFARSVWKI LVAIKDGLVL LFLLLFFAGL YAVLAMRPAP GMVREGALYL PLEGRVVEEA TEISPADFLT GQTPAPEYVE RDLTRAIEAA ATDKRIKAVV LDLESFGGGS AVHLSSIGAA MDRVRAARKP VFVRSLIYTD DAMQLAAHAS EAWVDPMGGV AITGPGGTML FYKGLIDKLK ANVHIFKVGT YKSAVEPYMR AQSSPEAREA MQAVYGAIWQ NWQDEVRKAR PKADLALATT DPAKWVADNG GDAAQAALKS GLIDRVGDRI AFGKRVAEVV GADDQGPLGS FKATELPVYL ADKPAAKDGS AIAVVTVAGE IVDGDAGPGV AGGDRIADLI DGVTQADDYA GLVLRVDSPG GSVMASERIR AAVERVRAKG LPVAVSMGSV AASGGYWVST PAQRIFAEPS TITGSIGVFA VLPTFEQTLP QYGVTTEQVR TTPLSGQPDL LGGLNPQVSA LMQGQVEQTY TRFLGLVAKA RGKSPADIDR IAQGRIWDGG TARQLGLVDQ FGGLDDAVAW VAKQAKADKW HAEYVEDEPS PVAQFLRQME TGEAPEARAH DLAGALAAQQ QGLVARMQAD LLRLIEGGGI KAYCLECASD DRGTANMRQR KADLGLLAWL GRLVA
|
| |