| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_2338 |
|---|
| Symbol | |
|---|
| ID | 3915683 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 2485636 |
|---|
| End bp | 2487165 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640445094 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_497609 |
|---|
| Protein GI | 87200352 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | [TIGR01733] amino acid adenylation domain
[TIGR03098] acyl-CoA ligase (AMP-forming), exosortase system type 1 associated |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCCG AGCCCGATCC CACCGTCCAT CCGCTCGATC ATCTTGCCCT TCGCGGAGAG
CGGGGGGCGC CTGCGCTCGT GCTCAGGAAC CACACCCTAA CCCACGAAGC GTTAAATGCT
CGTGTAGGAC TGCTCGCGAA CTGGCTGCAA TCGCGCGTGC CGGAGCGCGG CGCGCGGGTG
GCGACGTGGC TGCCGAAGTC GGAGCTGTCC TGCCTCATGC CGCTGGCGGC GGTCCGTGCT
AGTCTTGTGC ACGTGCCGGT CAATCCGCTG CTCAAGCGCG GGCAGGTCGC GCATATCCTG
GCCGACAGCG GCGCGGCGCT GCTCGTGTCG AACAAGGCGC GGCTGGATTC GCTGGAACCC
GGCGACGCGT CGTGCCCACT GATCGAGGAG CCCGCCGCAT GGGCCGAGGC CGAAGCGCTT
GGCGGGCAAT TGCCGCCATC GGACGCCGCG CCGGACAGCC TTGCCGCGAT CCTCTACACC
AGCGGGTCGA CCGGAAGGCC CAAGGGCGTG ATGCTGAGCC AGGCGAACCT CTGGCTGGGG
GCGGTCAGCG TGGCGCACTA TCTGCGGCTG TCGCCCGCAG ACCGGGTCCT TGCCGTCCTG
CCGCTGGCGT TCGACTATGG CCAGAACCAG TTGCTCTCGA CCTGGTATGC GGGTGGCAGC
GTGGTCCCGC TCGATTATCT GACGCCGCGC GACGTCGTGA AAGCCGTCGA GCGGCATGGG
ATCACGACGA TTGCGGCAGT TCCGCCGCTG TGGCTGCAAC TTGCCGAACT GGACTGGCCT
GAAGCTGCCC GCTCGCTGCG GCGCCTCACC AACAGCGGCG GCGCGCTGAC GCCGTCGCTG
GTTCGCGCGC TGCGCACGCG CTTCCCCGAG GCGGACCTCT ACCCGATGTA CGGCCTGACC
GAGGCGTTCC GCTCAACGTA TCTGGACCCC GCGCTCGTTG ACAGCCACCC GACATCGATC
GGCAGGGCCA TTCCCTTTGC AGAAGTTAGT GTCGTCAATG ACTTGGGGGA TGAAGCTGAG
GTCGAGGAAG AGGGTGAGCT AGTTCACGCC GGCCCTTTGG TGGCGCAAGG TTACTGGCAG
GATGCGGAGC GTACCGCCGA GCGGTTCAGG CCTGCGCCCC CGTTCTCGAA GCTTGGCGGG
ATGGCGGTCT GGTCGGGGGA TCGGGTCCGG CGCGATGCGG AAGGCCTGCT GCATTTCGTC
GGGCGGCGCG ACGCCATGAT CAAGACCAGC GGCAACCGCG TGAGCCCGCA AGAGGTCGAG
GAAGCCGCGG TGGCGACGGG CCTCGTCGCG GAGGCCGTGG CGCTGGGCCT GCCGGATCCG
CACCTGGGCC ATGCGATCCA TCTCGTCGCT CGCGCTTCTG GCGACGTGGA GGCGGCACGG
GCCGGACTGC TTCCGGCACT GACGCGCGCG TTGCCCAACT TCATGGTGCC GCGCCAGGTG
CATTGGCGCC AGGTCATGCC GGTCAGCCCC AATGGCAAGC TCGACCGCGT TGCGCTGGCC
GCCGAACTGG CGCAGGACGT GCAGGCATGA
|
|---|
| Protein sequence | MTAEPDPTVH PLDHLALRGE RGAPALVLRN HTLTHEALNA RVGLLANWLQ SRVPERGARV
ATWLPKSELS CLMPLAAVRA SLVHVPVNPL LKRGQVAHIL ADSGAALLVS NKARLDSLEP
GDASCPLIEE PAAWAEAEAL GGQLPPSDAA PDSLAAILYT SGSTGRPKGV MLSQANLWLG
AVSVAHYLRL SPADRVLAVL PLAFDYGQNQ LLSTWYAGGS VVPLDYLTPR DVVKAVERHG
ITTIAAVPPL WLQLAELDWP EAARSLRRLT NSGGALTPSL VRALRTRFPE ADLYPMYGLT
EAFRSTYLDP ALVDSHPTSI GRAIPFAEVS VVNDLGDEAE VEEEGELVHA GPLVAQGYWQ
DAERTAERFR PAPPFSKLGG MAVWSGDRVR RDAEGLLHFV GRRDAMIKTS GNRVSPQEVE
EAAVATGLVA EAVALGLPDP HLGHAIHLVA RASGDVEAAR AGLLPALTRA LPNFMVPRQV
HWRQVMPVSP NGKLDRVALA AELAQDVQA
|
|---|
| |