| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_2335 |
|---|
| Symbol | |
|---|
| ID | 3915680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 2482011 |
|---|
| End bp | 2483528 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640445091 |
|---|
| Product | lipopolysaccharide biosynthesis |
|---|
| Protein accession | YP_497606 |
|---|
| Protein GI | 87200349 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | [TIGR03007] polysaccharide chain length determinant protein, PEP-CTERM locus subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.104875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCA TCTACGAGGA AGTGCGCATC GCGCTCCACG GCATATGGCA CCGGCGCTGG
ATCGCGCTCG GCCTGGCCTG GGGCGTGTGC CTGCTCGGTT GGCTGGCGGT GGCGATGGTG
CCGAACAGCT ATGAATCGAA GGCCCGCATC TTCGTCCAGA TCGACGACGT GCTGGCCGAT
CAGATCGGCA TCGGCGGCGA CCGCAAGCGC GACATCGAGC GCGTGCGCCA GACGCTGACC
AGCGCGGTCA ACCTGGAGAA GGTCATCCGT GCAACCCGGC TGGGCGACAA GGTGACCAGC
GACAAGCAGA TGCAGGCGGC GGTCGAGAGC CTGGGCAAGC ACGTGACCGT CGTCAGCCAG
CAGGACAACC TGTTCGAGAT CACCGGGACG GCCGGTGGCG GCGGGCGCAA CGATGCCGAG
AACGCCCGGC TGGCGCAGGA CATCGTCCAG AAGATGATCG ACATCTTCCG CGAGGAAAAC
CTGGCCGGCG GGCGCGGCGA GATGACCGAT ACGCTGGCCT TCATGGACCA GCAGCTCACC
GACCGGAAGA AGGCGCTGGA AGAGGCCGAG CTCAAGCGCA CCGAGTTCGA ATCGAAGAAC
GCCGGCTTCA TCCCCGGCGC GGGGTCGCTC ACCACCCGGC TCGAGGCGGC GCGCAACCAG
ATGCGCGACG TCGAATCGAA CCTGCTGGCG GCGCAGAGCG CGCTCGCCTC GATCAGCGGC
CAGCTTTCGG GCACGCCGCA GACCATCGCC ATTCCGGGCG TGTCGGGTGG CGCCAAGGGT
GCCCTGGCGC AGGCGCAGGC CGACCTTGGC GCGATGCGCG CGCGCGGGCT TACCGACAGC
CATCCGGACG TGATTTCCGC CAAGGCCCAG ATCGCCAACC TGCAGAAGGC GGCGGCGGGC
GAGGGTGCTG GCGGCGGTAC GCCCAATCCG GCCTACAGCT CGCTGCTTTC GATCAAGGCC
GATCGCGAGG CGAGCGTGGT CTCGCTCCAG TCGCGCAAGG CCTCGCTCCA GGCCGAGATC
GCCCAGCTCA CCGCGCAGCA GTACAGCGAA CCGACCGTGG CCGCCGAAGC CGCGCGCATC
AACCGCGACT ACGACGTGCT CAAGGAGCAG TACGACAAGC TCCTGCGCGA CCGCGAGCAG
CTGCGCCTGC GCGGCCAGGT CGAGACGGAG CGCGACGCGG TGAAGTTCGA GGTGATCGAC
CCGCCGACGA TGCCGCGCGG GCCTGCGGCC CCCGACCGGC CGCTGCTGCT GTTCCTCGTG
CTGATCGTCG GCGTGGGCGC GGGTTGCGGC GGGGCATTTG CCTTCGGCCA GCTCAGGTCC
GCCTATTCGA CCACGGGGCA GCTCGAACGC GCGACCGGGC TTCCGGTCCT CGGCGGAATT
TCCGAGGCCA TCACCCGCAC CGCAAGGGCT GAGCGCGCAC GCCGCCTCAA GTGGTTCGCG
GGTGGTGTGG CAGGCCTGTT CGTCGTCCTC TTCGTCCTCC TCGGCGTCGA GATGCTGAAG
CGCGGCATGG TGGCCTGA
|
|---|
| Protein sequence | MTSIYEEVRI ALHGIWHRRW IALGLAWGVC LLGWLAVAMV PNSYESKARI FVQIDDVLAD
QIGIGGDRKR DIERVRQTLT SAVNLEKVIR ATRLGDKVTS DKQMQAAVES LGKHVTVVSQ
QDNLFEITGT AGGGGRNDAE NARLAQDIVQ KMIDIFREEN LAGGRGEMTD TLAFMDQQLT
DRKKALEEAE LKRTEFESKN AGFIPGAGSL TTRLEAARNQ MRDVESNLLA AQSALASISG
QLSGTPQTIA IPGVSGGAKG ALAQAQADLG AMRARGLTDS HPDVISAKAQ IANLQKAAAG
EGAGGGTPNP AYSSLLSIKA DREASVVSLQ SRKASLQAEI AQLTAQQYSE PTVAAEAARI
NRDYDVLKEQ YDKLLRDREQ LRLRGQVETE RDAVKFEVID PPTMPRGPAA PDRPLLLFLV
LIVGVGAGCG GAFAFGQLRS AYSTTGQLER ATGLPVLGGI SEAITRTARA ERARRLKWFA
GGVAGLFVVL FVLLGVEMLK RGMVA
|
|---|
| |