| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_2184 |
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| Symbol | |
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| ID | 3918849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | - |
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| Start bp | 2325969 |
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| End bp | 2328365 |
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| Gene Length | 2397 bp |
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| Protein Length | 798 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640444939 |
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| Product | Type IV secretory pathway VirD4 components-like |
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| Protein accession | YP_497457 |
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| Protein GI | 87200200 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGTA ATCTCGTCAA CTTCACGCGT GGCAGCCAGC TGCTCGGACA CTTCAGCTTC
ATGTTCGCGG CGGGTCTCAA GGGCCCATTG ATTGTCGCCG CGCTCGTGAT CTCATGGACC
TCCTGGTGGA CCATTTCGGC AGGCCTCACC GACCATGAAG TCTACCTCGT CTGGATGCGG
ATCTATGCCG CCATCTACGG CTTCATGGAG TTCGATGCCG CCAAGCGGAT CACCCTGGAA
ACTGCCTTTG GCGCGACCAT TCAGTTTCCG ATTGCGCAGC TCGAAAGCTA TCCGCCGGTG
GTCCATGCGT GGGAGAAGCT GACTGCGCTT CTGACCAGTG CCTTATGGCG GTCCGGCTTC
CTCCTGGTCC CCGTCTTTGC CGTCTTTTAC TGGTTCGCCG AGCGGTTCGG CGGCCGCTCC
AAAGAACGCA AACATGAGCG CGGCGCGATG CTCGTCACGC TCCCCGAGCT TGTCGATGAA
CTGACCGCGC ACAACCGGCG CGAGCGCACC CGTGAGCTCG ATTCCGCGCT GGGCTGGAAA
TGGCGGCTCA GCCTGCCGCG AGAGATCGCC CGGGTCTTTC CTTATCGGCC ATCGCACATC
GCCACGGTCT CCTATCCCTG GCGGCTCGAA CAAAGCCATG CGATGCTCAT TGGTACCACC
GGTATGGGCA AGACCGTGGC AATCTCCGAC ATGATTGCGG AAGCCAGAGC CAAGGGCCAG
CGCTGTGTGG TCTTCGATTT GACCGGCGCC TTTATCGAGC ACTTCCATGC GGCCCATTGC
GACATCATCC TGAACCCGCT CGATGCGCGT TGCCCCCAGT GGAGCCTGTT TGACGAATGC
CGTTCTGAAG GCGAGTTCTG GGCCGCGGCG GACGCCCTCG TCCCCCACGA CGGGGGCGGA
GAAGCCCAGT TCTGGGTGAT CGCTGCACGA GCCCTGTTCG TCGAATTCTG CCTCAAACTT
GTGGCTGAGG GCAGGGCGAC CAACGACGCC CTGGCCCGTG AGCTGATGAC CGCGGACCTG
TCGCGTGTTC ATGCCATGAT GCGAGGTACG ATCGCCGATC CTCTGACCGC GCCGGAAGCT
GCCCGCATGG CAGAATCGAT CCGGGCCGTC TTCAACGTGA ACGCCAAGGC GCTCAAGCTG
CTGCCGACTG CCGGACCTCG TTTCTCGGTC CGCCAGTGGA TCGAGGACGG GGCCGACAGC
GCCACAAGCG AAGGCTCGAT CCTGTTCATT TCGGCCCGCT ATGTCGACAT GAGCGTCTGC
GCGCAGTTGC TTACGCTCTG GCTCGACACG GCCATGAACA CGCTGATGAC GATGCCCCGC
ACCCGCGATC TCAAGTGCTG GTTCTTCGTC GATGAGCTGG GAGCATTGCA CCGCCTGCCA
GCCCTCGAGA AAGGCTTGCA GACGGCGCGC AATTTCGGCG GCGCGATTGT TCTTGGCCTG
CACGCCTATG CCAAGCTCAA GGAGGTCTAC GGCGAGAACA TGGCGATGAC GCTGGCATCG
CTTGCCCGGA CCAAACTGAT CCTTGGAACC GCCGACCGCG AAACGGCCAC CTGGTGCTCC
GACTTCATCG GCCATCGCCA GGTCAGGGAC ATGGAAGAGG GCTACACTTA CGGCTACAAC
AATGCCCGCG ATGCGGTCAG CCTGACCCCG CGCAAGCATA TCGAGCCGCT CCTGCTGCCT
GACCAGCTGA TGAACCTGCC GCGCTTGTCG GGGTACATCA AGTTCCCCGA CGGCTTTCCC
GCCGCACCGA TCAAGCTGAA GCCCGTCGAC CGACCCAAGC GGGCGGAGAC CTTCATTGCC
AGGGTCAAGG AAAGCCCGAA GGCAAGGGTC ACGGTGCCCC ATCCGGCGGC GGAGCAGGCC
GAGCAGAAGG CAGCGCCAAC AGGCAGCGAG CATCCCTCGT CCAACGATGA CGGAGCGGGC
AAGCCGGTCG TCCCAAAGCA GGGCGAACTG GCGCTGGATC AGGGACCGAA AGCCGCGCCG
AGACAGGAGC CTGACGCGCC AGCCAAGGAT ATTGGGCGAG CAGTGGAACA CCCACCCGGC
AAGACGTCGA AGGAGCGGGA GCCGGCAGCT CGCTCAGGGC AAGACAAGGC GGGCAAGGCC
AGGAAGGAGC AGTCGAATAC CAGAACCGAT GCGCGTGCGC GTAAAGCTGG ACCTTCCGCC
CGCCCACTTC TCCCGACAGG CGAAGCCGCA GCTGCGCCGG ATCAGTCGGC TTCGCCTAAG
GGCACGCCCC AGGCCAGCAC GCCCGGAACG GAAGGGCTGC AACAGGGCAA GCCGGATAAC
CCGAAGAGCC AAAGCTCCCG CGATGCCGCC GCGCGCAAGC TGATGATCGA GGATGGTTTG
CGGGAGCACG AGCCTCCGCC GATCACTGGT CCCGATCTTG GTGACATGGA GATGTGA
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| Protein sequence | MKRNLVNFTR GSQLLGHFSF MFAAGLKGPL IVAALVISWT SWWTISAGLT DHEVYLVWMR
IYAAIYGFME FDAAKRITLE TAFGATIQFP IAQLESYPPV VHAWEKLTAL LTSALWRSGF
LLVPVFAVFY WFAERFGGRS KERKHERGAM LVTLPELVDE LTAHNRRERT RELDSALGWK
WRLSLPREIA RVFPYRPSHI ATVSYPWRLE QSHAMLIGTT GMGKTVAISD MIAEARAKGQ
RCVVFDLTGA FIEHFHAAHC DIILNPLDAR CPQWSLFDEC RSEGEFWAAA DALVPHDGGG
EAQFWVIAAR ALFVEFCLKL VAEGRATNDA LARELMTADL SRVHAMMRGT IADPLTAPEA
ARMAESIRAV FNVNAKALKL LPTAGPRFSV RQWIEDGADS ATSEGSILFI SARYVDMSVC
AQLLTLWLDT AMNTLMTMPR TRDLKCWFFV DELGALHRLP ALEKGLQTAR NFGGAIVLGL
HAYAKLKEVY GENMAMTLAS LARTKLILGT ADRETATWCS DFIGHRQVRD MEEGYTYGYN
NARDAVSLTP RKHIEPLLLP DQLMNLPRLS GYIKFPDGFP AAPIKLKPVD RPKRAETFIA
RVKESPKARV TVPHPAAEQA EQKAAPTGSE HPSSNDDGAG KPVVPKQGEL ALDQGPKAAP
RQEPDAPAKD IGRAVEHPPG KTSKEREPAA RSGQDKAGKA RKEQSNTRTD ARARKAGPSA
RPLLPTGEAA AAPDQSASPK GTPQASTPGT EGLQQGKPDN PKSQSSRDAA ARKLMIEDGL
REHEPPPITG PDLGDMEM
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