| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_2073 |
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| Symbol | secD |
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| ID | 3917720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | - |
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| Start bp | 2212771 |
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| End bp | 2214378 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640444825 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_497346 |
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| Protein GI | 87200089 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGAAT TTCCGCGCTG GAAGGTGATC TGGCTCTGGC TGCTGACGCT GGTCTGCGTT
GCTGCCGCGA TCCCCTCGCT CACCTCCACG ATGGGCCTCG CCTGGCCATC CTCGCTTCCC
GAACCGAAGG TCAACCTCGG CCTCGACCTT GCTGGCGGTA GCCACATCCT GCTCGAGGCG
GACCCCTCGC AGGTTCGCCA GCAGCGTATC GAGGGCATGG AGGAATCGGT TCGCACCAAG
CTGAAGCAGG ATGACAAGAA CATCCGCATC AGCGACATCT CCAACCGTGA CGGCGCGCTG
ACTTTCGTGG TAGCCGATCC GTCGCAGGTC GATGCGGTGC GCGAGGCGAT CCTGCCGCTG
ACCAACGGTG CGGGGCTGAC CGGACAGCGC GACTGGGACA TCAACGTCGT TGACGGCAAC
CGCTTCGTGC TCAAGCCTAC CGACGCCGGG ATCGACCAGG CGGTGACCCA GGCGATGGAC
ACGGCGGTCG AAGTGGTGCG CAAGCGCATC GACGCGCTCG GCACCAAGGA GCCGACGATC
ATCCGCTCGG GGCCGACGCG CATCGTCGTC CAGGTTCCTG GCCTGCAAGA CCCGCAGGCG
CTCAAGAACC TGCTCGGCCA GACCGCCAAG CTCGAGTTCA AGCTGGTCGA TACCTCGGCG
CTGCCATCCG ACGTGGCGCA GGGCATCGCG CCTCCGGGCA GCGAGATCGT GCCATACGTG
TCGCCCGCCG AAGGCGGCGG GGTGCCCTCG ATCGCGGTCA AGCGGCTCGG CGGCATTCGC
GGCGACCAGC TGACCAACGC CCAGCAGACC AACAACCAGC AGACCAACGA ACCGGTCGTC
AACATCACCT TCAATACCGA GGGCGGCGCC AAGTTCGCCA AGCTGACCAC GCAGAACGTG
GGCAAGCAGT TCGCGATCAT CCTCGACGGC AAGGTGCTTT CGGCGCCGGT CATCAACGAG
CCGATCCTGG GCGGCAGCGC GGTGATCTCC GGCCGCTTCA CGACCGAAAG CGCGAACCAG
CTTGCGATCT CGCTGCGTTC GGGCGCGTTG CCGGTGGACC TGAAGGTGGT CGAGGAGCGA
ACCGTCGGTC CGGACCTTGG TGCCGATTCG ATCCGCAAGG GCGTGATCGC GATGGGCGTC
GGCACCCTGG CGCTCGCGGT GTTCATCCTC GCGACCTATG GCCGCTTCGG CGTCTATGCG
AACCTCGCGG TCATCATCAA CGTTCTGATG ATCCTTGGCA TCATGGGCAT AATCGGCACG
ACGCTGACCC TGCCGGGCAT CGCCGGCTTC GTGCTGACCA TCGGTGCGGC GGTCGACGCC
AACGTCCTGA TCAACGAACG CATCCGCGAG GAGCGGCATC GCGGACGCAA GGTCGTGCAG
GCGGTGGAAC TGGGCTACAA GGAAGCCAGC CGCGCGATCT TCGACGCGAA CATCACCAAC
GTCATCGCCG CCGTGCTCAT GTTCGCGTTC GGATCGGGCC CGGTGAAGGG CTTCGCCGTC
GTGCTGATGA TCGGCATCGC CACCTCGGTG TTCACCGCCG TGACGCTGAC GCGCATGTGG
GTGGCCGGAT GGCTGCGCCG CGCGCGGCCC ACTGAAATCG CCTTGTAA
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| Protein sequence | MLEFPRWKVI WLWLLTLVCV AAAIPSLTST MGLAWPSSLP EPKVNLGLDL AGGSHILLEA
DPSQVRQQRI EGMEESVRTK LKQDDKNIRI SDISNRDGAL TFVVADPSQV DAVREAILPL
TNGAGLTGQR DWDINVVDGN RFVLKPTDAG IDQAVTQAMD TAVEVVRKRI DALGTKEPTI
IRSGPTRIVV QVPGLQDPQA LKNLLGQTAK LEFKLVDTSA LPSDVAQGIA PPGSEIVPYV
SPAEGGGVPS IAVKRLGGIR GDQLTNAQQT NNQQTNEPVV NITFNTEGGA KFAKLTTQNV
GKQFAIILDG KVLSAPVINE PILGGSAVIS GRFTTESANQ LAISLRSGAL PVDLKVVEER
TVGPDLGADS IRKGVIAMGV GTLALAVFIL ATYGRFGVYA NLAVIINVLM ILGIMGIIGT
TLTLPGIAGF VLTIGAAVDA NVLINERIRE ERHRGRKVVQ AVELGYKEAS RAIFDANITN
VIAAVLMFAF GSGPVKGFAV VLMIGIATSV FTAVTLTRMW VAGWLRRARP TEIAL
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