| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1982 |
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| Symbol | |
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| ID | 3917301 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | + |
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| Start bp | 2099682 |
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| End bp | 2103176 |
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| Gene Length | 3495 bp |
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| Protein Length | 1164 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640444733 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_497256 |
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| Protein GI | 87199999 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGATC TCGACCGCAT CCTGTCGGCC AAGTCGCCGC TAACCCTGTC GTCCGTAGCA
CGCGGCGCGC AGCCGCTCGT GCTCGCCGAC CTTGCTCGCG CTGCGCGCGG CCGCACCGTA
TTCATCGCGC CCGACGAGGC CGCCATGCGC GCCATTGTCG ACAGCGCGGC ATACTTCGCC
CCGGACCTCG ACGTCATAGA CTTTCCGGCA TGGGACTGCC TGCCGTTCGA CCGCGCTTCG
CCGGCGCTTT CCGTCAGCGC CCGCCGTCTG GCCGCATTGC AGAAGCTGCA GCACACGCGT
TCCGGCCCCC AGCTTCTCGT CACGACGATC AATGCCGCGC TCCAGCGCGT ACTCACGCCC
TTCCGCATCC GCGAATCCAC ACGCCTGCTC ACGCCCGGCA CCGAAATCGG CCGGGAAAGC
CTGATCGCTC TCCTCCAGCG ACAGGGCTAT TCGCGCACTG ACACCGTCGT CGATGCGGGC
GAATACGCAG TGCGCGGTTC GGTCTTCGAC ATCTTTCCGT CAGGCCTCGA CCACGGCCTC
AGGCTCGACT TCTTCGGAGA CGAACTGGAA ACCCTGCGCC TGTTCGATCC GAACACCCAA
CGCTCGGTGC AGCCGGTAGA AACGCATCTT CTGCTCCCGG CAAGCGAAGC CCTGCTCGAT
GAAGACAGCA TCAAGCGCTT CCGCAGTCGC TATCGCGAAA TGTTCGGCGC GAACGCCACT
GGCGACCCGC TGTATCAGGC AATCAGCGAT GGCCGCCGCC TTGCCGGAAT GGAACACTGG
CTGCCGCTGT TCGAGGACAG GGTCGTCACG CTCTTCGATC ACCTTGGCGA GAACGATCTC
GTCCTGATCG ACACGACCGC GATCAAGGCG GCCGAGCAGC GCATCGCGGA CATCGCGGAC
TATCATCAGT CGCGTCTGGA TTCGTCGTCC AAGGCGCCGG GGAGCTATCG CCCGCTCTCG
GAAAGCGCCC TGTACCTTAC GCGTGACGAA CTGGATCGCG CCCTGGCGGG CTGGCCCGTC
CACCGCACCA CGATCTTTGC CGAGCCGGAA TCGAAGCACG TCATCGATTT CGGCTTTGCG
TCCAGTCACG ATTTCACCCC CGAACGCGCG GCGGCGGGAA GTGGCGGCGG GAACATCTAC
GAAGCAGCCG CCAAATACAT CTCGGCGCTC GGCACGCGCG GCAAGAAGCC GATCATTGCC
GCTTATACCT CGGGGTCGCG TTCGCGCCTT GCCTCGCTTC TGGCCGAGGC AGGCAAGTTC
ACGCCTCAGA TAGCAGAGAA CTGGCAGCAG GCACTGGGCC TTGCCGCATC GGGCAAGCCG
GTCGCCATCG TCCTGCCGCT CGAACAGGGC TTCGCCAACG ACGACCTCGA ACTGCTTACC
GAGCAGGACA TCCTGGGCGA CCGCCTCGTC CGCAGGAAAA GGAAGCGCAA GGACGCCGAT
GCCTTCCTGG CCGAGCTTTC CGCGCTTACC CCGGGCGATC TGGTGGTCCA CATGGATCAC
GGCATCGGGC GCTACATCGG GCTGGAAGCC GTCGCCGTCG GCGCTTCTCC CCATGACTGC
GTCCAGCTCG AATACGCCGG TGGCGACAAG CTCTACATCC CCGTCGAGAA TCTCGACGTA
CTCTCTCGCT ACGGCTCGGA CGCCGAGGGC GTGTCGCTCG ACAAGCTCGG CGGCGAGGCA
TGGCAGCGCC GCAAGGCGCG CATGCGCGAG CGCATCCTCG AGATGGCCGG CCAGCTCATG
GCAACGGCCG CGCATCGCGC CCTTCGACAG GGTCTGGTCC TGCCGGTCGA CCCCGCCAGC
TACGGCCCCT TCATCGACCG CTTCCCCTGG GACGAAACGG AAGACCAGGA GCGCGCCATC
GACGACGTCC TCGGAGACAT GGCCGAGGGC AAGCCGATGG ATCGTCTGGT CTGCGGCGAT
GTCGGCTTCG GCAAGACCGA GGTTGCCCTC CGCGCTGCGT TTGTCGCGGC GATGCAAGGC
GTTCAGGTGG CCGTGGTTGC GCCAACTACC CTGCTCGCGC GGCAGCACTA CGCGAACTTC
GTCGAACGTT TCAACGGCTT CCCCCTCCAG ATCGGCCGCC TCTCACGCCT CGTGCCGGCC
AAGGAAGCCA GCGAAACGAG GGCCGGGCTT GCAGATGGGC GAGTCGATAT CGTCATCGGC
ACACACGCGC TGCTGTCGAA GTCGGTCGAG TTCAAGCGCC TGGGCCTTGT CATCGTGGAC
GAGGAACAGC GCTTTGGCGT GACCCACAAG GAGAAGCTCA AGGAACTGAA GGCGGACGTC
CACGTCCTGA CTCTCACAGC CACTCCGATT CCGCGCACGC TGCAGATGGC GATGTCCGGG
CTACGCGAGC TTTCGACGAT CCAGACCCCG CCGGTCGATC GCCTCGCCAC GCGCACCTAC
GTCATGCCGT GGGACGACAT GGTCATGCGC GAAGCCCTCC TGCGCGAACA CCAGCGCGGC
GGGCAGAGTT TCATCGTCGT GCCGCGCATT GCCGACATGC CGGAACTCGA GGAATGGCTC
CGGCTCAATG TCCCCGAAGT TCGCTTCGTC ACCGCGCACG GCCAGATGAG CCCGACCGAA
GTCGAGGACC GCATGGGCGC TTTCTACGAG AAAAAGTACG AAGTGCTGCT GTCCACCACC
ATCGTGGAAA GCGGCATCGA CATTCCTTCG GCCAACACCA TCGTCATCCA CCGCGCCGAC
CGCTTCGGGC TCGCCCAGCT CTACCAGCTT CGCGGGCGCG TCGGTCGCGG CAAAATCCGC
GCCTACGCCT ATCTTACCGT GCCCGAGGAC ATGGCCCTGT CCGAAGTCGC GGAAAAGCGC
CTCAAGGTGC TCGGCGACCT CGACAGCCTC GGCGCCGGCT TCCAGCTCGC CAGCCATGAT
CTCGACATTC GCGGCGCCGG CAACCTGCTG GGCGACGAGC AGTCGGGCCA TATCAAGGAA
GTCGGCTTCG AACTCTACCA GTCGATGCTC GAGGACGCGA TCCTCGCCGC CAAGGCAGGC
GACATCGGCC TTGCCCGCGA GCGCGAGGCC TTGAGCCCGC AAATTACCCT CGACGCCCCT
ATCATGATCC CCGAGGACTA CGTTCCCGAC CTCGCCGTGC GCATGGCGCT CTACCGCCGC
ATGAACGACG CCGACGGACC GGATGCGGTC GAGGCATTGG CCGCCGAGAT GATCGACCGC
TTCGGCCCCC TGCCCGCGCC CACGCAGAAC CTGCTGCGCC TGATCGAAGT AAAGCGCCAG
GCCATCGCGG CAAACATCGC CAAGATCGAC GTGGGCCCCA AGGGCGCGCT GGTCAGCTTC
CACAAGGACA CCTTCCCCGA CCCGGTCGGC CTCATCGGCT ATGTCGAGCG CCTGAACGGC
GTCGCCAAGC TGCGCCCGGA CAACAAGCTC GTCATCCAGC GTGCATGGGG AACGGCGGAG
GGACGGCTCA ACGGCCTCGT GCAGCTCACC AAGGGCCTCT CGGCGATCGC CCGTCGTGCC
AGGAAAGCGG CCTAG
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| Protein sequence | MSDLDRILSA KSPLTLSSVA RGAQPLVLAD LARAARGRTV FIAPDEAAMR AIVDSAAYFA
PDLDVIDFPA WDCLPFDRAS PALSVSARRL AALQKLQHTR SGPQLLVTTI NAALQRVLTP
FRIRESTRLL TPGTEIGRES LIALLQRQGY SRTDTVVDAG EYAVRGSVFD IFPSGLDHGL
RLDFFGDELE TLRLFDPNTQ RSVQPVETHL LLPASEALLD EDSIKRFRSR YREMFGANAT
GDPLYQAISD GRRLAGMEHW LPLFEDRVVT LFDHLGENDL VLIDTTAIKA AEQRIADIAD
YHQSRLDSSS KAPGSYRPLS ESALYLTRDE LDRALAGWPV HRTTIFAEPE SKHVIDFGFA
SSHDFTPERA AAGSGGGNIY EAAAKYISAL GTRGKKPIIA AYTSGSRSRL ASLLAEAGKF
TPQIAENWQQ ALGLAASGKP VAIVLPLEQG FANDDLELLT EQDILGDRLV RRKRKRKDAD
AFLAELSALT PGDLVVHMDH GIGRYIGLEA VAVGASPHDC VQLEYAGGDK LYIPVENLDV
LSRYGSDAEG VSLDKLGGEA WQRRKARMRE RILEMAGQLM ATAAHRALRQ GLVLPVDPAS
YGPFIDRFPW DETEDQERAI DDVLGDMAEG KPMDRLVCGD VGFGKTEVAL RAAFVAAMQG
VQVAVVAPTT LLARQHYANF VERFNGFPLQ IGRLSRLVPA KEASETRAGL ADGRVDIVIG
THALLSKSVE FKRLGLVIVD EEQRFGVTHK EKLKELKADV HVLTLTATPI PRTLQMAMSG
LRELSTIQTP PVDRLATRTY VMPWDDMVMR EALLREHQRG GQSFIVVPRI ADMPELEEWL
RLNVPEVRFV TAHGQMSPTE VEDRMGAFYE KKYEVLLSTT IVESGIDIPS ANTIVIHRAD
RFGLAQLYQL RGRVGRGKIR AYAYLTVPED MALSEVAEKR LKVLGDLDSL GAGFQLASHD
LDIRGAGNLL GDEQSGHIKE VGFELYQSML EDAILAAKAG DIGLAREREA LSPQITLDAP
IMIPEDYVPD LAVRMALYRR MNDADGPDAV EALAAEMIDR FGPLPAPTQN LLRLIEVKRQ
AIAANIAKID VGPKGALVSF HKDTFPDPVG LIGYVERLNG VAKLRPDNKL VIQRAWGTAE
GRLNGLVQLT KGLSAIARRA RKAA
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