| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1960 |
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| Symbol | |
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| ID | 3917276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | - |
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| Start bp | 2077582 |
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| End bp | 2079534 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640444708 |
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| Product | oligopeptide transporter OPT |
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| Protein accession | YP_497234 |
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| Protein GI | 87199977 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1297] Predicted membrane protein |
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| TIGRFAM ID | [TIGR00728] oligopeptide transporters, OPT superfamily
[TIGR00733] putative oligopeptide transporter, OPT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTACAG GTTCGGGACC CCGGGAACTG ACGATCAGGG GCATCGTCCT CGGCGCGATC
CTTACTGTCG TATTCACTGC CGCTAACGTC TATCTCGGCC TCCGGATCGG CCTGACCTTT
GCGACGTCCA TACCAGCCGC GGTCATTTCC ATGGCCGTCC TGCGCGCGTT TTCCGGGGCA
ACCATCCAGG AAAACAATAT CGTCCAGACC ATTGCAAGTT CCGCAGGTAC GTTGTCGGCA
ATCGTCTTCG TGCTGCCCGG TCTTGTCATG GTGGGATGGT GGGCCGACTT TCCCTATTGG
GAGTCGGTCG CGGTCATTGC GGTCGGCGGC GTGCTTGGCG TGATGTATTC GGTGCCGCTG
CGCCGTGCTC TCGTTACGGG ATCGGACCTC CCCTATCCGG AAGGCGTCGC CGCGGCCGAA
GTGCTGAAGG TCGGCGCTGG CGTTGGCGGA GAAGAGGAAA ACCGCAAGGG CCTCGCCGCC
GTGACTGCGG GCGGCCTGCT TGCCGCGCTC TATCCGCTCC TCGCCAAGAT GAAACTCGCG
GCCGAGGAAG TTGGCGGGGT GTTCAAGGTC GGGACCGGAG GCTCGATGCT GTTCGGCGGC
CTGTCGCTCG CGCTCGTCGG AGTGGGCCAT CTGGTGGGCA TCGCGGTGGG CATTGCCATG
CTCGTCGGCA TCGTGATTAG CTTCGGCGTC CTTCTCCCCC AGTTCACCAC CGGGGGGCCG
CCGGTCGGGA CAGAACTGGC CGATTTTGTC GGCACGGTGT TTCGCCAGAA AATCCGTTTC
ATCGGCGCTG GCACCATTGG CGTTGCAGCC ATCTGGACGC TGCTGCGCGT AATCGGCCCC
ATCGTGCGCG GCATTGCATC GGCCATCGCA GCAAATCGCG CGCGGAAGGG CGCCGGCATC
GCCAGTCTCG ACCTGGCCGA ACGGGACATT CCAATTGGTA TCGTGGGCGG CACGATCCTG
CTTGCGATGG TGCCCATTGC ACTGCTTCTC GCCGACTTTG CGGTCGGAGG CCCCGTCGCC
GCCGCGCTCG GCATGACGCT TATCGCTTCG GTCGTCTACG TGCTGGTCGC TGGCATCGTG
ATTGCTTCTG TCTGTGGCTA CATGGCCGGT TTGATCGGCG CTTCGAACAG CCCTATCTCG
GGTGTTGGTA TCCTTGCCGC GCTCGGTATT TCCCTGCTTC TGCTCGCCCT GTTCGGGCAA
GCGACCAATC CCGACGATAC CAAGGCGCTA GTCGCATTTG CGCTATTCGT CACGGCAATC
GTCTTCGGCG TAGCCACGAT TTCGAACGAC AACCTTCAGG ATCTCAAGAC CGGTCAGCTC
GTCGGCGCGA CGCCATGGCG CCAACAGATA GCTCTGGTCC TCGGCGTCCT GTTCGGTGCG
TTGGTCATCC CGCCGATCCT CGACCTTCTC AATTCCACTT TCGGGTTCCA GGGCGCTCCG
GGGGCAGGGG AGAACGCGCT GTCGGCACCC CAGGCCGCAC TCATCTCCGC TATTGCGCAG
GGTGTTCTTG GCGGCAGTCT CGACTGGAAC CTCGTCGGCC TCGGCGCTGC GATCGGTGCC
GGCGTCATCC TCGTGGACGA ACTGCTAAAG CGCTCGGGCA ATCGGTCCCT TCCTCCACTC
GCGGTGGGAA TGGGCATGTA CCTGCCAACG CAGGTGACGA TGCTGGTCAT CGCAGGCACG
GTGCTGGGAC ACCTCTACAA TCGCTGGGCC CTGCGTCAGT CCTCGCCCGA GCTTGCGGAG
CGCATGGGCG TCCTGACGGC TACCGGTCTT ATCGTCGGTG ACAGCCTGTT CAACATCGCC
TACGCCGCCA TCGTCGCGGC GACCGACAAT CCCGATGCGC TGGCTGTAGT TGACGGCTTC
CCGGCAAGCT TGCCGCTGGG CGTGGCGGTT TTTGCCGCGA TCATCGCCTA TGCATACTGG
CGGATGCGGC GGGACGGAGG CAACCCCGCC TAG
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| Protein sequence | MTTGSGPREL TIRGIVLGAI LTVVFTAANV YLGLRIGLTF ATSIPAAVIS MAVLRAFSGA
TIQENNIVQT IASSAGTLSA IVFVLPGLVM VGWWADFPYW ESVAVIAVGG VLGVMYSVPL
RRALVTGSDL PYPEGVAAAE VLKVGAGVGG EEENRKGLAA VTAGGLLAAL YPLLAKMKLA
AEEVGGVFKV GTGGSMLFGG LSLALVGVGH LVGIAVGIAM LVGIVISFGV LLPQFTTGGP
PVGTELADFV GTVFRQKIRF IGAGTIGVAA IWTLLRVIGP IVRGIASAIA ANRARKGAGI
ASLDLAERDI PIGIVGGTIL LAMVPIALLL ADFAVGGPVA AALGMTLIAS VVYVLVAGIV
IASVCGYMAG LIGASNSPIS GVGILAALGI SLLLLALFGQ ATNPDDTKAL VAFALFVTAI
VFGVATISND NLQDLKTGQL VGATPWRQQI ALVLGVLFGA LVIPPILDLL NSTFGFQGAP
GAGENALSAP QAALISAIAQ GVLGGSLDWN LVGLGAAIGA GVILVDELLK RSGNRSLPPL
AVGMGMYLPT QVTMLVIAGT VLGHLYNRWA LRQSSPELAE RMGVLTATGL IVGDSLFNIA
YAAIVAATDN PDALAVVDGF PASLPLGVAV FAAIIAYAYW RMRRDGGNPA
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