Gene Saro_1900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_1900 
Symbol 
ID3917121 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand- 
Start bp2012590 
End bp2013240 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content63% 
IMG OID640444644 
Productshikimate kinase 
Protein accessionYP_497174 
Protein GI87199917 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0703] Shikimate kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.976916 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCCCAT CAGCAATACC TCAGGCGATA CTTGCAACGG GCACTAGCGC AAGTATAGGC 
GGCGCGGCAA TGGAACATGA TGCGGCCCTT CTCAGTTCGT CGGAAATCGA CCGCATCGGG 
CGAAGGATCG GCCGTCCGCT GGTCCTTGTC GGCATGATGG GCGTGGGCAA GACCACGGTG 
GGCCGCAAGC TTGCCTCACT GCTTCACGTT CCGTTCGTCG ATGCCGACGA AGAGATCGAG 
CGTGCCGCGC ACATGCCCAT CCCCGAAATC TTCGCCACCT ATGGCGAGCC GTATTTCCGC 
GACGGAGAGC GACGGGTGAT CGCGCGGCTC ATGGGCACGG GCCGCAACAC GGACCGGAAG 
GTCCTTTCAA CCGGCGGCGG CGCGTTCTGC GACCCCGCAA CCCGCGCCCT GATCCTCGAG 
CGTGGCATTG CCGTCTGGCT GGACAGCGAC GTCGATACCC TGGTCGAGCG GGTGGGCCGC 
AAGGACAACC GTCCCTTGCT GAAAACGGGC AATCCGCGCG AGATCCTTAC CCGCCTGAAG 
GACGAGCGCG AGCCGTTCTA TGCGCAAGCG CCGATCCACA TGACCAGCGG GGCGCAACCG 
CACCAAGTCA CGGCAAGCAA GATATTGAGG GCAATCGATC AATGGCTGTA A
 
Protein sequence
MPPSAIPQAI LATGTSASIG GAAMEHDAAL LSSSEIDRIG RRIGRPLVLV GMMGVGKTTV 
GRKLASLLHV PFVDADEEIE RAAHMPIPEI FATYGEPYFR DGERRVIARL MGTGRNTDRK 
VLSTGGGAFC DPATRALILE RGIAVWLDSD VDTLVERVGR KDNRPLLKTG NPREILTRLK 
DEREPFYAQA PIHMTSGAQP HQVTASKILR AIDQWL