| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1771 |
|---|
| Symbol | |
|---|
| ID | 3918330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 1867958 |
|---|
| End bp | 1869577 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640444512 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_497045 |
|---|
| Protein GI | 87199788 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.301435 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACTCAGC AGCTTGGTGC AATGCAGGAC TGGAAGCTGC GCGTTACGCA CCTGATCGAT
CATGCCGCGC GCGAGCACGG GCAGCGCGAA ATCGTCAGCC GCTGGGCAGA TGGCAGCGAA
AGCCGCACGA CCTGGGCGGG CATCCGTCAC GACGCATTGC GCATGACGCA GGCCCTGCGC
CGCCTTGGCG TGAAGCCGGG CGACCGCATC GCCACGCTTG CGATGAACCA CCACCGCCAC
CTGGTAAGCT GGTACGGTTC GGTCGGCGTC GGCGGGATTC TCCATACGCT CAACCCGCGC
CTGTTCGACG ACCAGCTCGA ATACATCGTC AATCACGCCG AAGACCGCGT GATGCTGTTC
GACAAGCAGT GGACCCCCAT CATCGAGCGC ATGAAGTCGC GCTGGCCCAC GGTCGAACAT
TACATCTGCT TCGACAGCAG CGAGCCCGCG CTTCATTTCG AGGAGTGGAT CGCTTCCGAA
GACGGGCAGA CCGAATGGGC CGACGGCGAT GAGCGCGACC CTTGCATGCT CTGCTACACC
AGCGGCACGA CCGGCAATCC CAAGGGTGTA CTGTACGAAC ACCGCTCGAC CGTGCTCCAC
GCAATGAGCG CGATCAGCCC CCCGATCTTC GGGCTCGATT GCCGTTCGGT CATGCTGCCG
ATCGTGCCGA TGTTCCACGC GGCAAGCTGG GGCTTGCCCT GGGCGGGCGC GGCGGCGGGC
GCGAAGTTCG TATATTCCGC GGTCAATGAC GGCGCGGTCC TGTGCGACCT GATGAACCGC
GAGAAGGTGA CCTGTTCGGC CGGCGTGCCC ACTGTCTGGC TGGCGCTGCT CCAGCATGTC
GATGCCCACA ATGGCGGCGA AATTCCACCG ACCCTGCAGA CCATCGTCTG CGGCGGCTCG
GCCATGCCGC GCGCGATGAT CGAACGCTTC ATGCGCGCCG GCCGCCGCGT GGCCCACGCC
TGGGGCATGA CCGAGACGTC GCCGATCGGC ACTACCGGCG CGGAAACGTG GAACTGGGAC
GACCTCAGCT TCGACGAAAA GGTGACCGTC AAGGCAATGC AGGGCCGTCC GCCCTTCGGC
GTCGAGATCC GTTGCGTCGA TCTTGGCGAT CCCGGCAAGG TGCTACCGCG CGATGGCGTG
ACGGCGGGGG CCTTGCAAGT GCGCGGGCCG TGGATCGTCA AGCGCTACTT CAAGGCCGAA
CAGGATGCGG TGGCCGCCGG GCAGTGGTTC GACACGGGCG ATGTCGGCGT GATCCATCCG
GACGGAACCC TGCAACTGAC GGATCGCACG AAGGACGTCA TCAAGTCGGG CGGCGAATGG
ATCAGTTCGG TCGAACTGGA GAATGCCGCC ATCGGCCACC CGGCCGTTGC CGAGGCCGCC
GCGATTGGCG TCTACCATCC CAAGTGGGAC GAGCGGCCGC TGCTTGTCGT GATCCGCAAG
CCGGGAATGG ACGTCAACCA GGAGGAATTG CGAAGCTACC TCCAGCAGCA CGTCGCCAAG
TGGTGGGTGC CCGATGCGGT GGCATTCGTG GACCAGATCC CGCATACCGG CACCGGAAAG
ATCAGCAAGA AGGACCTGCG CGACCAGTTC CGTGACTATC GCTGGGACGA GGTTGCCTGA
|
|---|
| Protein sequence | MTQQLGAMQD WKLRVTHLID HAAREHGQRE IVSRWADGSE SRTTWAGIRH DALRMTQALR
RLGVKPGDRI ATLAMNHHRH LVSWYGSVGV GGILHTLNPR LFDDQLEYIV NHAEDRVMLF
DKQWTPIIER MKSRWPTVEH YICFDSSEPA LHFEEWIASE DGQTEWADGD ERDPCMLCYT
SGTTGNPKGV LYEHRSTVLH AMSAISPPIF GLDCRSVMLP IVPMFHAASW GLPWAGAAAG
AKFVYSAVND GAVLCDLMNR EKVTCSAGVP TVWLALLQHV DAHNGGEIPP TLQTIVCGGS
AMPRAMIERF MRAGRRVAHA WGMTETSPIG TTGAETWNWD DLSFDEKVTV KAMQGRPPFG
VEIRCVDLGD PGKVLPRDGV TAGALQVRGP WIVKRYFKAE QDAVAAGQWF DTGDVGVIHP
DGTLQLTDRT KDVIKSGGEW ISSVELENAA IGHPAVAEAA AIGVYHPKWD ERPLLVVIRK
PGMDVNQEEL RSYLQQHVAK WWVPDAVAFV DQIPHTGTGK ISKKDLRDQF RDYRWDEVA
|
|---|
| |