Gene Saro_1754 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_1754 
Symbol 
ID3916329 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand+ 
Start bp1849331 
End bp1849885 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content67% 
IMG OID640444495 
ProductTPR repeat-containing protein 
Protein accessionYP_497028 
Protein GI87199771 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.107491 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACGCCG GTACATTCAG CGATGGTCTC CGGCTCAAGG AGTTGCTGAT GCGTTTTGCC 
CCCGTTGCGC TTGCCCTTTC CCTCATCGTC GGCGTGACGG GCAGCATGGG ATCGGCGCGC 
AGTTCCGCGC CGCTCGATCC CCGCGCGGAA GTGCTTCTCA AGGAAGGTCG CGCCCTGCTT 
GGCAAGGGTG ACGTCGCGGC GGCCACGGAC AGCTTCGAGG CGGCCCTGGC GATCGAGCCG 
GGCAATGTCG GCACGCTCGT CGCGCTGGCC GACGCCGCGC GCCGGGATGG CCTTCAGGGC 
AAGGCGATCC ACTATTACCG CGAAGCGCTG GAGCGTGAGC CGAACAACGT TGCCGCCATT 
TCCGGCGAGG GCGGCGCGAT GGTCGAGAAG GGCGCGGTCG AGAAGGCGCG CAAGAACCTG 
ACCCGGCTTG AAGGGCTTTG CGGGAAGAGC TGCCCGGAAA CCACCGAACT TTCCGCCGCC 
ATCGCTCGCG GCCCGACGCC CAAGGTCATG TCCGCAGAGG CGGTTACCGC CGAGCCGAAG 
GTTGAAGCGA ACTAG
 
Protein sequence
MHAGTFSDGL RLKELLMRFA PVALALSLIV GVTGSMGSAR SSAPLDPRAE VLLKEGRALL 
GKGDVAAATD SFEAALAIEP GNVGTLVALA DAARRDGLQG KAIHYYREAL EREPNNVAAI 
SGEGGAMVEK GAVEKARKNL TRLEGLCGKS CPETTELSAA IARGPTPKVM SAEAVTAEPK 
VEAN