| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1695 |
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| Symbol | |
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| ID | 3916270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | + |
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| Start bp | 1779469 |
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| End bp | 1782000 |
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| Gene Length | 2532 bp |
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| Protein Length | 843 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640444436 |
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| Product | ATP dependent DNA ligase |
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| Protein accession | YP_496969 |
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| Protein GI | 87199712 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.616199 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGCGCA ACGATCCGCT CGCCGCCTAC AACGCCAAGC GCGACTTCGC GCGCACTGCG
GAACCTGCCG GCAAGCGCAA GTCCAGCGCC ACGGGCAATC TCTTCATCGT CCAGAAGCAC
GACGCCACCC GCCTGCACTG GGACTTCCGC ATGGAGGTTG ATGGCGTGCT CAAGAGTTGG
GCCGTGACCC GGGGCCCTAG CCCCGATCCC GACGACAAGC GCCTCGCTGT CCAGACCGAG
GACCACCCCC TCGAATACGC CCGGTTCGAA GGCATCATCC CCGAAGGCGA GTACGGGGGC
GGCACCGTCA TGCTCTGGGA CAAGGGCACC TGGGAGCCGG TCGAGGGCAA GAGCGCCAAG
GATCTGGAAA AGGGGCACCT CCATTTCCGC CTCGAGGGGG AGCGGATGAA GGGCGAATGG
CTGCTTGTCC GCCTCAAGCG TCGCGGCAAT GAAAAGCGCG ACAACTGGCT CCTGCGCAAG
CTGGACGACG CCTATGCGGG CCAGGGCGAC CAGCTCGTCG AGCGCGGCCT GACCAGCGTC
CTCACCGGCC GCACCATGGC CGAAATCGCC TCCGACAAGG CTGGCAGCCA TTCGCTCAAA
GGCAAGCGCG GCAAGGCCTT CGCTTCGGTG ATGGAAGAAG CAGGCACGCA TAACCGCAAG
GTCGGCAAGG CGCGCGGCAA GGCACCGTCC AGGGCGCGCC GGAACGCACC GCTACCCGCC
TTCCAGCCCG TCCAGCTCGC AACCCTGGTC GATACGGTGC CCGATGGGCG CCAATGGCTG
TACGAGATCA AGTTCGACGG CTACCGCGCG CTCGTCGCAG TGCGGGGAAC CGAGGTCCGC
GTCTTCACCC GCAGCGGTCT CGACTGGACC GAAAAGTTCG CGCCGCTTGC CCGCCATCTC
GCCGGGCTCA AGCTGCCGTC GTGCCTGATC GACGGCGAGA TCGTCGCCGC CGATGCCGAT
GGCAATCCCG ATTTCTCGCG GCTTCAAGCC GTGCTCAAGC GCGGGCATGG CGAACAGGGC
GAGGGTGATG CCTTGTCGTT CCACGCCTTC GACTTGCTGG AACTCGAAGG CGAAGACCTG
AAGCCCCTGC CCAATGTAGA GCGCAAGCAG AAGCTCGCCG CGCTGCTTGC CGGGGTCTCG
CCGCCGATCC ACGTCGCCGA CCACATCATC GGCGGCGGCG AAAAGCTGCT TGGCGCGCTG
TGCGGCGCGG GGCAGGAAGG GATCATCTGC AAGCGCGCGG ACGCGGCCTA TGCGGGCAAG
CGGACGCAGA ACTGGCTGAA GGTGAAGTGC GTGGCCCGCC AGGAATTCAT CGTCGTCGGC
TTCACCCGGT CCAGCGCCCG CCGCCGCCCT TTCGCCTCGC TTCTCCTGGC CCAGCGCGAG
GGAAAGGCGC TGGTCTACAA GGGCAAGGTG GGCACCGGCT TTGACGAGGA CCTGCTGCAA
GACCTCGCCA CCCGGTTCGA AGCCCTCAAG GTCGACGAAG GTCCGCTCGA TGTGCCCATA
ACCGAAGCGC GCGGCGTGAC CTGGCTGAAA CCCGAACTCG TCGCGGAAAT CGCCTTTGCC
GAATTTACCG CCGAAGGCCG TGTCCGCCAC GCCAGCTTCG TCGGTCTGCG CGAAGACAAG
AAGGCCGCGG ACGTCGTCCC CGAACGGCCC GCCCCGCTGG TCGTTCAGCC GGAAATCGTG
CCGATCAGCA ATCGCGAGCG GGTGATCTTT CCCGAAAGCG GCCAGACCAA GGGCGACCTT
GCCGATTACT ACGCCGCGAT GGCGCCCGCG ATGCTCCCGT TCATCGCCAA CCGCCCCGTC
AGCCTCGTCC GCTGTCCTCA GGGGCGCGCG CGCCACTGCT TCTTCCAGAA GCACGATAGC
GGCTCGTTCG GCGAACACGT CCACCACGTT CCGATCCGCG AGAAGGATGG CAACGAGGAG
GAGTATCTGT TCGTCAGTGA CGCCGCCGGC ATTCTCTCGT GCGTGCAGAT GGGCACGATC
GAGTTCCACG GCTGGTGTTC TCTGGCAAGC GATGTCGAGG CGCCCGAACG GATGGTCATC
GACCTCGATC CCGACGAGGG GCTCGATTTC AACGACGTCA AGCGCGCCGC CCGCGATATT
CGTGACCGCC TGTCCGACCT CGGTCTCGTC AGCTTTGCCA TGCTTTCCGG CGGCAAGGGC
GTTCACGTCG TCGTGCCGCT GCGGCCCGAC CACACCTGGG AGGCTCACGC CAGCTTTGCC
GAACGTTTTG CCCGCGCGCT CGCCCTGGCG GAACCCGATC GCTACGTCGC AACGATGAGC
AAGGCCAGGC GCAAGGGCCG CATCTTCATC GACTGGCTCC GCAACCGGCG CGGCAGCACC
GCTGTCATGC CCTATTCGGC GCGCGCCCGC GCCAACGCTC CCGTCGCGGT GCCGATCGCC
TGGGAGGAAC TCGACGACTT CGCGAACGCC CACCCCTTCT GCATCGGCGA TACGGCAGGA
CTACTCAAGC GTAGCGAAGG CAAGTCGCTG CGCGGCTGGG GAATGGCCCA ACAGTCCCTC
CCGGACGTTT AG
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| Protein sequence | MGRNDPLAAY NAKRDFARTA EPAGKRKSSA TGNLFIVQKH DATRLHWDFR MEVDGVLKSW
AVTRGPSPDP DDKRLAVQTE DHPLEYARFE GIIPEGEYGG GTVMLWDKGT WEPVEGKSAK
DLEKGHLHFR LEGERMKGEW LLVRLKRRGN EKRDNWLLRK LDDAYAGQGD QLVERGLTSV
LTGRTMAEIA SDKAGSHSLK GKRGKAFASV MEEAGTHNRK VGKARGKAPS RARRNAPLPA
FQPVQLATLV DTVPDGRQWL YEIKFDGYRA LVAVRGTEVR VFTRSGLDWT EKFAPLARHL
AGLKLPSCLI DGEIVAADAD GNPDFSRLQA VLKRGHGEQG EGDALSFHAF DLLELEGEDL
KPLPNVERKQ KLAALLAGVS PPIHVADHII GGGEKLLGAL CGAGQEGIIC KRADAAYAGK
RTQNWLKVKC VARQEFIVVG FTRSSARRRP FASLLLAQRE GKALVYKGKV GTGFDEDLLQ
DLATRFEALK VDEGPLDVPI TEARGVTWLK PELVAEIAFA EFTAEGRVRH ASFVGLREDK
KAADVVPERP APLVVQPEIV PISNRERVIF PESGQTKGDL ADYYAAMAPA MLPFIANRPV
SLVRCPQGRA RHCFFQKHDS GSFGEHVHHV PIREKDGNEE EYLFVSDAAG ILSCVQMGTI
EFHGWCSLAS DVEAPERMVI DLDPDEGLDF NDVKRAARDI RDRLSDLGLV SFAMLSGGKG
VHVVVPLRPD HTWEAHASFA ERFARALALA EPDRYVATMS KARRKGRIFI DWLRNRRGST
AVMPYSARAR ANAPVAVPIA WEELDDFANA HPFCIGDTAG LLKRSEGKSL RGWGMAQQSL
PDV
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