Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_1595 |
Symbol | |
ID | 3918703 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_007794 |
Strand | - |
Start bp | 1655345 |
End bp | 1658650 |
Gene Length | 3306 bp |
Protein Length | 1101 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640444335 |
Product | polysaccharide deacetylase |
Protein accession | YP_496869 |
Protein GI | 87199612 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis [R] General function prediction only |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis [COG3858] Predicted glycosyl hydrolase |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCCGCC CGATCTTCTA CGACCCGACC GGTCGCCGCA GCCTTCTCGC CAAGCGTTCG CTGGCAGTCG TCTTCCTTGC CGTGATCCTT GCGGCGCTGG CCTTCGCGAC GACACTCGTC GCGGTGCCGC GACAGCGCGC GCTGTCGCTG CCGCAGCCCC ATTTCGAAGC CGCCAGCCTG CACCGGGGCC ATGGGCTGTC CCGCCTCCGC TCCTGGCTGC CCCGGCTGCA CCTGCAACGC AGCCAGGAAG CCCTGGCGAT CGGCTTCTAC CAGCCTCGCA GCGATGCCAG CTTCCAGTCG CTTTCGCGCC ACGGCAACCA GCTCGACTGG GTCGTGCCCG CGCTGCTCAA CGTCGCGGGG CCGGAACACC GCCTTGCCGT GTCCAATGAC CCGCGCTTCG ACAGCTTCGT CGCGGCAGGG CATCACCACT ACAAGGTCTT GCCGATGGTC CAGAACGTCG GCGGCGACGG CTGGGACGGC GCGAACGTGG CCCGCATTCT GGAAAACGCC ACCGAGCGCC ATGCGCTCGA ACGCCAGTTG GCCGACTACG TGGCGCGACG CGGCGACGCA GGCCTTGTGC TCGACTTCGA GGACCTGCCA GCCACGGCCA TGCGCCCCTA TGTCGCGTTT CTGCGCGAAA CGAACGCCCT CCTGCCCGCC GGAGCCCAGC TTGCGGTGAC AGCCCCCGCG GGCGAGGACG ACTGGCCGAT TGCCGCTCTT GGCCGTGCCG CCGACAAGGT CATCCTCATG GCCTACGACG AACACTGGCA GAATGGTGCT GCTGGTCCGA TCGCATCGCA AACGTGGTTC ACGAACGAGG TCGAGAAGTC CGCCCGTGCC CTGCCCGCCG ATCGCCTGGT CATCGCGCTT GGCAGCTATG GCTACGACTG GCACCAGGGC GGCACCGATG CGCTGTCTCT CAGCGACGCC TGGCTCGCCG CTCATGACAG CCACGCTCCG ATCATCTTCG ACAAGGCCAG CGGCAACGCG GGCTTCGCTT ACGAACAGGA CGGCGTATCC CACACCGTCT GGATGCTCGA TGCCGCCACC GACTGGAACG AGATGCTGGC GGTCCAACGC CTCGGCATCG GCAATCTAGC GCTCTGGCGC CTCGGCACTG AGGACCCGGG CTTCTGGAAT GACCTCGCGG CCCTGCGCTC GGGCAAGGCG CCCGATCTGT CGCGCCTCGT CTCCGAAGGC GGCAACGACG TCGAAGGCAC CGGCGAGATC CTGCGCATCA CCGCCACCCC CGTCGCGGGC AGCAGGACCG TCGCCTTCGG GGACCAGCAC CTGATCCGCG ACGAACGCTA TGGCGACTTG CCCACGCCCT TCGTCGTGCG CCGTACCGGG GCCGCCAACC CCAAACTCCT CGCCCTCACC TTCGATGACG GTCCCGATCC GAAGTGGACC CCCAAGGTCC TTTCCACGCT CGAAGCCGCC CATGTGCCCG CGACCTTCTT CGTCATCGGC GAAAACGCGC TTGTCCGACC CGACCTTCTT CGCCGCATGG TCGCCGACGG CGACGAGATC GGCAACCATA CCTACACCCA CCCCAACCTG GCAGGTTCAT CGGAAGCCGA GACCCGGCTC GAAATCAACG CCACCCAGCG CCTCGTCCAG GCCTACACCG GCCGCAGCAT GACCCTTTTC CGCGCACCCT ACTTCGGCGA CGCGGAGCCG ACGACCGCAG ACGAACTACA GCCGGCCCTT CGCGCACAGC AGGCCGGCTA TACCATCGTC GGCCTTCATG TGGACCCGAA CGACTGGCAG AATCCCGGTA CGGACGAAAT CGTCCGCCAA GTCGTCAACC AGATCCACAA CGCGACGGAA CAATCCAGCA GCAACGTCAT CCTGCTACAC GACGGCGGCG GCGACCGCTC GCAGACCGTC GCCGCCCTCC CGCGTATCGT CGCGGTGCTG CGGGCCGAAG GCTACAGCTT CGTCACCGCG TCGCAACTCG TCGGCATCCC GCCGCAAGCA GCCATGCCCC GGCTGTCGTC ATCCGATCTC GCCGCGGTGC GGGTCGACGT CGCCGCCTTC CTCGCGCTCG ACGGCCTGGT CACGCTGTTC TCGTGGCTGT TCTTCGTCGC GATCGCGCTC GGTATTGCCA GGGCGGTCAT CATGGCTGGC CTGGCTTGGT GGCAAAGCCG CTCGCCCCGC GCCGAGCCTC CCGCGTTCGA ACCCACCGTC TCTGTCATAA TCCCCGCCTG GAACGAGGAA CGCGTGATCG CCGCGTCGGT CGAGCGCGTG CTCGCCAGCG ATTACCCCGC CCTTCAGGTG ATCGTCGCCG ATGACGGGTC GAAGGACGCC ACCAGCGCGG TTGTCGCCCG CCATTTTGGT CATGACCCGC GCGTCACGCT CCTCACGCTT GCGAACGGAG GCAAGGCGGC GGCGCTGAAC CGTGCCCTGC GCCACGCCAC CGGCGAGGTC GTGATCGCGC TCGATGCCGA TACGCAGTTC GAACCGCTGA CCATTCGCCG CCTTGCGCGC TGGTTTGCCG ACCCCCGGAT CGGCGCGGTC GCAGGCGATG CCCGCGTCGG CAACCGGGTG AACCTCGTCA CGCGCTGGCA GGCGGTGGAA TACATCACCG CCCAGAACCT CGAACGCCGC GCGCTTGCGG GCTTCGACGC CATGACCGTC GTGCCCGGTG CCGTGGGTGC ATGGCGTCGC GCGGCGCTCG ACAGCGTGGG CGGCTATCCC GAAAACACGC TGGCCGAAGA CCAGGATCTC ACCATCGCCA TCCAGCGCAA GGGCTGGCGC GTGACATACG ACCCCCGTGC CGTCGCCTGG ACAGAGGCGC CCCAGACCTT CCGCGCGCTC GCTCGCCAGC GCTATCGCTG GGCCTTCGGC ACGCTCCAGT GCCTGTGGAA GCATCGCAAG GTCATCACTT CCCGCAAGCC CGCCGGTCTT GGCCTTGTCG GTCTCCCGCA GGCCTGGCTG TTCCAGATCG CCTTCGCCGC GATCTCGCCG CTGATCGACG GTGCCTTGAT CGCCTCGATC ATCTCCACGG TCGTCAGGGT GGTCCAGCAT GGCTGGGCCC AGACCCAAGG CGATCTTGGT CGCATGGCGA TCTACTGGAG CCTCTTCACC GCCATCGACG TCATCTGCGG CTGGATTGCC TACCGCCTCG ACGACAAGCG GCCACCTTAT CCGGCGCACC TGCTGGTCGC CCAGCGCATC GTCTACCGCC AGATCATGTA CTGGGTTGTC CTGCGAGCCC TTGCCTCCGC CATCGGAGGC TGGATCGTCG GTTGGGGAAA GCTCGAGCGT ACCGGGACCG TCAGTCCCGC CCCGGAACGC GCTTGA
|
Protein sequence | MTRPIFYDPT GRRSLLAKRS LAVVFLAVIL AALAFATTLV AVPRQRALSL PQPHFEAASL HRGHGLSRLR SWLPRLHLQR SQEALAIGFY QPRSDASFQS LSRHGNQLDW VVPALLNVAG PEHRLAVSND PRFDSFVAAG HHHYKVLPMV QNVGGDGWDG ANVARILENA TERHALERQL ADYVARRGDA GLVLDFEDLP ATAMRPYVAF LRETNALLPA GAQLAVTAPA GEDDWPIAAL GRAADKVILM AYDEHWQNGA AGPIASQTWF TNEVEKSARA LPADRLVIAL GSYGYDWHQG GTDALSLSDA WLAAHDSHAP IIFDKASGNA GFAYEQDGVS HTVWMLDAAT DWNEMLAVQR LGIGNLALWR LGTEDPGFWN DLAALRSGKA PDLSRLVSEG GNDVEGTGEI LRITATPVAG SRTVAFGDQH LIRDERYGDL PTPFVVRRTG AANPKLLALT FDDGPDPKWT PKVLSTLEAA HVPATFFVIG ENALVRPDLL RRMVADGDEI GNHTYTHPNL AGSSEAETRL EINATQRLVQ AYTGRSMTLF RAPYFGDAEP TTADELQPAL RAQQAGYTIV GLHVDPNDWQ NPGTDEIVRQ VVNQIHNATE QSSSNVILLH DGGGDRSQTV AALPRIVAVL RAEGYSFVTA SQLVGIPPQA AMPRLSSSDL AAVRVDVAAF LALDGLVTLF SWLFFVAIAL GIARAVIMAG LAWWQSRSPR AEPPAFEPTV SVIIPAWNEE RVIAASVERV LASDYPALQV IVADDGSKDA TSAVVARHFG HDPRVTLLTL ANGGKAAALN RALRHATGEV VIALDADTQF EPLTIRRLAR WFADPRIGAV AGDARVGNRV NLVTRWQAVE YITAQNLERR ALAGFDAMTV VPGAVGAWRR AALDSVGGYP ENTLAEDQDL TIAIQRKGWR VTYDPRAVAW TEAPQTFRAL ARQRYRWAFG TLQCLWKHRK VITSRKPAGL GLVGLPQAWL FQIAFAAISP LIDGALIASI ISTVVRVVQH GWAQTQGDLG RMAIYWSLFT AIDVICGWIA YRLDDKRPPY PAHLLVAQRI VYRQIMYWVV LRALASAIGG WIVGWGKLER TGTVSPAPER A
|
| |