Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_1523 |
Symbol | |
ID | 3917198 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_007794 |
Strand | + |
Start bp | 1567809 |
End bp | 1568795 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640444264 |
Product | type II secretion system protein |
Protein accession | YP_496798 |
Protein GI | 87199541 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4965] Flp pilus assembly protein TadB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCTCG AACTTCTCAG GTTCTTTGCC CTGTTGGCTA TCTTCGTATT CGTCGTGATC GTCGTGCAGC AGGCCGCCAA TGCAACGCTC ACGCGGCAGC GCAATCGCAA CGCGGTCAAC AAGCGGCTGA AGCTGCTCGC GTCGGGGATG GATCGGGAAG CGGTCACAAA TCTTCTCAAG GTCAATCACG CAGGGTCTTT CAGGCGCCGC GGGATTGTCG TCCGGCTTCG CAGGATGCTT GCCAGAACCG GCATGAGCAT AACGCCGGAC AGGATATTGG CGGGAATGGC CATCGCGACT GCGGTGGCCA TAATACTGCT GAGCCTTCTG GCGTTCAGTC TCGGCACCAC GATAACCTTG GGTACGATTC TGCTGATTTG TGTCGTCGGC CTTGGTTTCG GGGCCGGCAT TCCCTACGTC GTTTTGAACC GTAGCGCGGA AAAGCGAAGG AAGCGGATGG AGCAGCAGTT CGCTCCCGCC GTGGACATCT TCACGCGCGC CTTGCGAGCA GGGCATCCTG TAGCTTCGGC GATCAGCCTC CTGTCCACTG AGATGGCGGA TCCAATCGGC ACAGAGTTCG GCCTCGTCGC GGACGAGATC GCCTATGGCG CGAACCTCAA TGACTCCCTG GTAGCACTTG CGGAACGCTG GGAACTGGAA GATCTGCACA TGTTCGCAGT CTGCCTGTCA GTGCAGAGCG AAACGGGCGG CAATCTGGCT GAGATCCTTG GAAACCTTGC GTCGGTCATT CGCGACCGCG CGAGCCTTTA CCAGAAGGTG CGCGCGTTGA GCTCCGAAGG GCGGGCAAGC GCCTGGATGC TTTCGGTCCT GCCCGCACTG ACGATGCTTG TCCTCTTCAT GATAAACCCG AGCTTCTACC TTGAGGTGTC GGGCGACCCG CTGTTCGCGA CAAGTTTCGC CGGCATGATC GGTCTCTATC TCATCGGCGT GCTGTGGCTT CGCAGCATGG TTGACCTGAA GGTGTGA
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Protein sequence | MTLELLRFFA LLAIFVFVVI VVQQAANATL TRQRNRNAVN KRLKLLASGM DREAVTNLLK VNHAGSFRRR GIVVRLRRML ARTGMSITPD RILAGMAIAT AVAIILLSLL AFSLGTTITL GTILLICVVG LGFGAGIPYV VLNRSAEKRR KRMEQQFAPA VDIFTRALRA GHPVASAISL LSTEMADPIG TEFGLVADEI AYGANLNDSL VALAERWELE DLHMFAVCLS VQSETGGNLA EILGNLASVI RDRASLYQKV RALSSEGRAS AWMLSVLPAL TMLVLFMINP SFYLEVSGDP LFATSFAGMI GLYLIGVLWL RSMVDLKV
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