| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1435 |
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| Symbol | |
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| ID | 3916099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | + |
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| Start bp | 1478581 |
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| End bp | 1481271 |
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| Gene Length | 2691 bp |
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| Protein Length | 896 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640444178 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_496713 |
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| Protein GI | 87199456 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.665756 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCAG AGCAGTTTCC GGAAGTAACG AGCACCGCAG GCCGCGCGCG CCACTTTGCG
CGTACGCGGC GCCGTGAGCG TTCGGCACAG CCGGCGTTCC GCGAAGCGGG GGCGACTTTC
CTGTTCGGAG GCGACCCCTC GAACCGTCTT GTGGCACCGG AATGGCCGAA GATGGCAATT
CCGATGGCGC TCGCACTGGC CGGGCTTGCC CTTTTCAACT TGTCCATCCC CACGATCCTT
CCGGCACTGC TCGCGCTTCT GGCGCTGGTT GCCACGCACT TCTCATCCAT TGCCGTCAAG
ATCGAGTCGG AGCGGAAGCT TGAAACTGGA CAGCGCCTTG CGTTGATGGG ACTGGCGGTT
GCCTTGCCGA TGTTCCTGTT TGGGTCGGCG ATGGGCTTCT GGGGGGAGTC AGGGCAGGTC
GCATGGTTCG GCTGTCTCGC CGTCGTGGTC ACGACTGGTG TCCTGGCGAC GGTGGTCCAG
TCAGGCCGCC TTGTCGCGGT GATCGCCGCC CAGGTAGGCA TCTGGTCCGG TGTGACCTGT
GTCGCGAGCC GTGCCGGCGG CTATTTTGCG CTGGTTCTCG GCGTTGCAAT TGCGATTGCA
GCCTATCTGC GGCAGCGGAA AATCGACTTG CATGCCAGGA AGAAATCCGA AAGCGACCAG
CGCGCCCAAA CCCGGGCCGA GGAGATTCTC GCAGACTACG AGGAAACCGG GCAGGGCTGG
TTCTGGGAAA CAGACAGGCG GGGACACCTT GCCTACCTTT CCAGTCCGGT CGCCGCGATC
CTCGGCCGCC GGGTGGAGGA GCTTGTCGGC CGACCGTTTT CGGAACTGTT CAACCTGACT
GAGCAGTCCG GGGAAGGCGA GCGCACACTG GCGTTCCACC TTTCCGCCCG GTCCAGCTTC
AGTGAACTCG CGGTGCGCGC GGCGACGCGC GATGAGGAGC GATGGTGGTC GATTACGGGA
CGGCCAACCT ATGACACATT CAACAACTTC GCGGGGTTCC GCGGATCCGG GACCGACCTG
ACGGAGAAGC GGCGCTCGCA GGAGCACGCA TCGCGGCTGG CCCATTTCGA TTCGCTCACC
GGTTTGTCGA ACCGGTTTCG CATGTCGCAA ACTCTCGAGA AGATCCTCCT TGCGCCGCAA
GTGCAGCACC GCGCTTGCGC GGTGTTTCTG CTCGACCTGG ACCGTTTCAA GCAGGTCAAC
GATACGCTCG GGCACCCTGC AGGCGACGCT CTGCTCAAAC AGGTGGCGCA GCGCCTGGAG
CGCGTCGTAG GCAAGATCGG GCGGGTCGGC CGCCTTGGCG GCGACGAGTT TGAAGTGATC
CTGCCCGGGA AGATGGAGCG TGGGCAGCTC GGGCACATGG CCGGGCGTAT CATCGAAAGC
CTTTCGCAGC CCTATTCGAT CGAGGGCAGC CGCGTCATGA TCGGGGCATC GGTCGGCATT
GCGCTCGCTC CTGACGATGG TGTGACCAGC GAGGCGCTGA TCCGCAACGC TGATCTGGCG
CTTTATGCCG CCAAGGATGG CGGGCGAGGT CGCTTCCATT TCTACGCCCC CGACCTCCAC
AGCGATGCCG AAGAGCGTCG TCAGATGGAG GAAGACTTGC GCGACGCGGT CTCGAATGGA
GGGCTCGAAT TATACTACCA GCCCGTCGTC CGGACCGCGA CCGAGAAGAT CACCGGGTTC
GAGGCCCTGC TGCGCTGGAA TCATCCGGAG CATGGATGGA TCAGTCCTGC TCGCTTCATC
CCGATTGCCG AGGATACCGG CCTCATCGCC ACCATCGGCG AGTGGGCTTT GCGCACTGCA
TGCCAGGATC TCGCACGCTG GCCGGAGAAC GTCCGGGTGG CGGTCAACGT GTCTCCGCTT
CAGTTCGCCA ACCCCTCGTT GCCGGTCGTC GTCACCAATG CCCTAGCCAC GGCCCAGGTG
GCGGCCGAGC GGCTTGAGCT GGAAATCACC GAGAGCGTGT TCCTCAACGA CGACGAGGGC
ACCGACCAGA TGTTCAAGTC GTTGAAGGCG ATCGGCGTGC GGCTAGCCCT GGACGATTTC
GGAACCGGCT ATTCGTCACT TGGCTATCTT CGCTCGGCGC CCTTCGACAA GATCAAGATC
GACCAATCCT TCGTTCGCGG TGCAACGCAG CCGGGCAGCC GAAACGGCGC GATCATCGCG
TCCATCGTCA GCCTTGCCGA AGCGCTGGGT ATGGAAACGA CCGCCGAGGG CGTGGAAACG
CTCGACGAAC TCGATCTCGT GCGCATGCTC GGGTGCAGCC ACGTCCAGGG GTATATCTAC
GAACGACCGC TATCCGCGAT GAACGCCGCT GCGCGGCTCT CCACAGGATT GATGGCCATC
GCGCAAGGCC CGCGTTCCGC GCGTGCCGCC CGCCAGTCCA TGCTGCGCAA GGTCATCCTC
GACCATGGCG GTCACCGCTA TGATGCCATG GTGCGTAACA TCAGCCAGAC CGGCGCACTC
ATCGAAGGGC TGTGGAATGT GCCGGCCGGA ACGATCTTCC GCATCCTGAT TGCCGACAAT
CACGTCGTGA CCGGGACCTG TCGCTGGTCG GCCGATGATC GGATGGGCGT TGAATTCTCG
GTGCCGCTAC GCCTGGATGA GAACGGGCGG ATCGCAGCCG TTGCCGCCCC CGTCGGGGTG
CGGTTCGCGA TTGCAGAACA AGAGGTCGTT GCGTCGCGCA AGGTTGGCTA A
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| Protein sequence | MSAEQFPEVT STAGRARHFA RTRRRERSAQ PAFREAGATF LFGGDPSNRL VAPEWPKMAI
PMALALAGLA LFNLSIPTIL PALLALLALV ATHFSSIAVK IESERKLETG QRLALMGLAV
ALPMFLFGSA MGFWGESGQV AWFGCLAVVV TTGVLATVVQ SGRLVAVIAA QVGIWSGVTC
VASRAGGYFA LVLGVAIAIA AYLRQRKIDL HARKKSESDQ RAQTRAEEIL ADYEETGQGW
FWETDRRGHL AYLSSPVAAI LGRRVEELVG RPFSELFNLT EQSGEGERTL AFHLSARSSF
SELAVRAATR DEERWWSITG RPTYDTFNNF AGFRGSGTDL TEKRRSQEHA SRLAHFDSLT
GLSNRFRMSQ TLEKILLAPQ VQHRACAVFL LDLDRFKQVN DTLGHPAGDA LLKQVAQRLE
RVVGKIGRVG RLGGDEFEVI LPGKMERGQL GHMAGRIIES LSQPYSIEGS RVMIGASVGI
ALAPDDGVTS EALIRNADLA LYAAKDGGRG RFHFYAPDLH SDAEERRQME EDLRDAVSNG
GLELYYQPVV RTATEKITGF EALLRWNHPE HGWISPARFI PIAEDTGLIA TIGEWALRTA
CQDLARWPEN VRVAVNVSPL QFANPSLPVV VTNALATAQV AAERLELEIT ESVFLNDDEG
TDQMFKSLKA IGVRLALDDF GTGYSSLGYL RSAPFDKIKI DQSFVRGATQ PGSRNGAIIA
SIVSLAEALG METTAEGVET LDELDLVRML GCSHVQGYIY ERPLSAMNAA ARLSTGLMAI
AQGPRSARAA RQSMLRKVIL DHGGHRYDAM VRNISQTGAL IEGLWNVPAG TIFRILIADN
HVVTGTCRWS ADDRMGVEFS VPLRLDENGR IAAVAAPVGV RFAIAEQEVV ASRKVG
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