| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1403 |
|---|
| Symbol | |
|---|
| ID | 3917858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 1445564 |
|---|
| End bp | 1447267 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640444146 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_496681 |
|---|
| Protein GI | 87199424 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0679086 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTTGTCC CAGGGGGAAC CGGCCGTGTT GCCGGAACCG GGGCTAGCGA AGGCAGGGGT
ATGGCGACGG CGCCTGACAG ACTCGATGAA GCAGGCAGGG CGGAAGATCA GGCCCACAAC
GATTTGCTTG GCTTGGGCAT CATCATTGCC GCAGTCCTCC TTTTCGTCGC CAATGGCTCG
ACCGTTCTGG CGGACTTCGT ACATTCGCTG ATGACCGGCA GCCGCCCGCG CGAACCAATG
CTCGGCACGG CCCTCATCCT AAACATCGCG CTGCTCCTGT TCGGCTGGCG GCGCTACGTC
GACCTGACGC GCGAGGTAGG GCAACGCCGC GAGGCGGAAG AGACGGCGCA CAAGCTGGCG
CACACCGATC CCCTCACCGG CTGCCTCAAT CGGCGCAGCA TGGGGCCGGC GGTCGAACAG
ATGGTCAGCA CCGCCCGCAC CAGCGGGCAC GAGGTCGTCG TGATGATGAT GGACCTCGAC
AACTTCAAGC GCTCCAACGA CGTGCACGGT CACCAGGCCG GTGACGCCGT GCTCCTCCAC
ACGGCGGATC GCATCCGGGC CATCCTTCCC GCCGGCTCGA TCATCGCACG CCTCGGCGGC
GACGAATTCG CCTGCGCGGC GATCTTCGAT CCCGACCACG TCGAATCCAT CGACCGCCTC
ATCCTGCGCA TGAACGAGGC GGTGGCGATG CCCGTGCGGG TTGACGGTCT CATGCTCGAA
GTAACCGCAT CGATCGGGCT AGCCGCGACC AGCGCGGCCG ATGCAGGCGC GCCGCCGGCG
CTGGCCGACA CGCTTCTCCA CCGCGCCGAC CTCGCCATGT ACCAGGCCAA GAAGGCTGGC
CGGAACCGTT ACTGCTGGTT CGAGCAGAAC ATGGAGAGCG AACTGCGCTT CCGCAGCGAG
CTGGAGCGCG AAATCCGGGA AGGCGTCGCA CGCGGCGAAT TCGTGCCGTA CTACGAAAAG
CAGATCGATC TCGAAACCGG CGAGCTGACC GGCTTCGAAA TGCTCGCACG GTGGCGCAGT
CCGCGCCACG GCCTGCTGTC TCCGGAAATC TTCATCCCGA TCGCCGAGGA AATCGGCCTC
ATCTCCGAAC TGTCGGAAAA CCTGATCCGT CAGGCCCTGC GCGATGCACG TGATTGGGAC
CCGACCCTGA CCCTGTCGGT CAACATCTCA CCAATCCAGC TACGCGACCC GTGGTTCGCG
CAGAAGCTGC TCAAGCTGCT GGTCGAGGCG AACTTTCCGC CGCACAGGCT CGACATCGAA
ATCACCGAGA CCTGTCTGCA CGAGAACGTG GGCGTGGTTC GCACGCTGAT CACCAGCCTC
AAGAACCAGG GCATCCGGAT CAGCCTCGAC GACTTCGGCA CGGGCTATTC CAGCCTTGCC
CAGCTTCGCA CCCTGCCCTT CGACCAGATC AAGATCGACC GCTTCTTCGT GTCGAACCTG
GGCAAGAACA AGGACAGCGC CACGATCGTC GAGGCGATCT CCTCGCTGGG CAAGGGCATG
GACCTGCCGA TCACTGCCGA GGGCATCGAG TCCCCCGAAG TGCTCGACGA ATTGCGCAAG
TTCGGCAAGT TCAAGGGCCA GGGTTTTCTC TACGGCCAGC CGGGCGATGC CAGCGAGATC
CGCGCGATGC TGGCGGACCG CCAACTCCTT CAGCAGCAGG CGGAAAATCA GTCCGGCATC
CCGGCCCGTA CCGCAATCGC CTGA
|
|---|
| Protein sequence | MVVPGGTGRV AGTGASEGRG MATAPDRLDE AGRAEDQAHN DLLGLGIIIA AVLLFVANGS
TVLADFVHSL MTGSRPREPM LGTALILNIA LLLFGWRRYV DLTREVGQRR EAEETAHKLA
HTDPLTGCLN RRSMGPAVEQ MVSTARTSGH EVVVMMMDLD NFKRSNDVHG HQAGDAVLLH
TADRIRAILP AGSIIARLGG DEFACAAIFD PDHVESIDRL ILRMNEAVAM PVRVDGLMLE
VTASIGLAAT SAADAGAPPA LADTLLHRAD LAMYQAKKAG RNRYCWFEQN MESELRFRSE
LEREIREGVA RGEFVPYYEK QIDLETGELT GFEMLARWRS PRHGLLSPEI FIPIAEEIGL
ISELSENLIR QALRDARDWD PTLTLSVNIS PIQLRDPWFA QKLLKLLVEA NFPPHRLDIE
ITETCLHENV GVVRTLITSL KNQGIRISLD DFGTGYSSLA QLRTLPFDQI KIDRFFVSNL
GKNKDSATIV EAISSLGKGM DLPITAEGIE SPEVLDELRK FGKFKGQGFL YGQPGDASEI
RAMLADRQLL QQQAENQSGI PARTAIA
|
|---|
| |