Gene Saro_1355 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_1355 
Symbol 
ID3917807 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand
Start bp1400714 
End bp1403167 
Gene Length2454 bp 
Protein Length817 aa 
Translation table11 
GC content71% 
IMG OID640444095 
ProductATP-dependent helicase HrpB 
Protein accessionYP_496633 
Protein GI87199376 
COG category[L] Replication, recombination and repair 
COG ID[COG1643] HrpA-like helicases 
TIGRFAM ID[TIGR01970] ATP-dependent helicase HrpB 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.166416 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCGACC TGCCGATCCA TTCCGTCCTG CCGGACCTGC TTGCCGCGCT GCGCCAGCGG 
GAGAGCGCGG TGCTGATCGC GCCGCCCGGC GCGGGAAAGA CCACTGCGGT GGCGCCCGCC
TTGCTGGCGG AACCCTGGTG CACCGGGCAG GTCATCGTGC TGTCGCCCCG CCGCGTTGCC
GCGCGCGCAG CGGCCGAGCG TATGGCCGAG ATGCTCGGCG AAGAAGCGGG CGGCACCATC
GGCTACGTTA CCCGGCTCGA CAGCAGGCGT TCGGCACGGA CACGGGTGCT GGTGGTGACC
GAGGCGATCT TCGTCGCCAC GATTCTGGAT GATCCCGAAC TGTCCGGCGT TTCGGCGGTG
CTCTTTGACG AAGCCCACGA ACGCCACCTC GATAGCGACC TTGGCCTCGC GCTCGCGGTG
GAGGCTCAGG GTGTGCTTCG CGAGGACCTG CGGATCGTCG TGATGTCAGC CACGATCGAC
GGCTCCCGCT TCGCCGCGCT GCTGGGCGAT GCGCCGGTGA TCGAGAGCGA GGGCAAGGCC
CATCCGCTCG CGATCAGGTG GCTTGGCGCC CGGCCCGACG CGAAGGTCGA GGTGGCGATG
GCCTCGGCGA TACAGACGGC ATGGCGCGAG GAGGAGGGCG ACATCCTCGC CTTCCTGCCC
GGCGTTGCCC AGATCGAACG GACCGCAGAG ACTCTGGCCG AACGCCTTCC GCAGGCGCTG
ATCCTGCCGC TGCACGGACA GGTTGAGCCC GGCGGCCAGC GCGCGGCAAT CCGGCGCGAT
CCCTCCGGAC GTCGGCGCAT CGTGCTGGCC ACTGCGATTG CCGAAACGTC GCTGACGCTG
GATGGCGTGT CCGTGGTGGT GGACGCCGGG CTGTCGCGCC GGGCAGAATT CGACAAGGCA
GCGGGAGTCA CGCGCCTTGT CACCACGCGG GCGAGTCAGG CATCGGCTGC CCAGCGCGCG
GGTCGCGCGG CGCGGCAGGG GCCGGGCGTT GCCTATCGAC TGTGGGAAGA GGCGTCCCAC
GCGGGCCGTC CGGCGTTCGA CCCGCCTGAA ATGGTTACCA GCGACCTTGC GCCGCTGGCG
CTCACACTGG CGCAGTGGGG CGCGGGCGAT CCGGCCACGA TGGCCTGGCT TGATCCGCCC
CCGGCTGCTG CCATGGCGGC GGCCCAAGGT GCGCTGGCGG CGTTGGGTGC GCTCGACAAA
GACAGGCGGA TCACCACGCA TGGCCGCGCG ATGGCGAAGC TGCCGATGGA GCCGGCGCTG
GCCCATATGC TCCTTTTCGC CGCCGAGCGC GGGCAGGCAG AGGAGGCGGC GCGGCTTGCG
CTGCTGTTGC AGGAACGTGG CCTTGGCGGA CGCGGCGAAG ACCTCGCGCG GCGGCTGGAC
CGCTGGGCGA GCGAGCGCGG CAGCCGTGCC GAGGCTTCGC GCAAGCTGGC GGGGCGCTGG
GCGCGCATGG CTGAGCGACT CGCCCCGCGC GGCAGGGCAG GCGAGGTGCC GACCGGCGTT
CTTCTGGCCG AGGCATTCCC CGATCGTATC GCGCGCGCGC GTTCGGTTTC GGGCGAGGAA
TGGCTGTCGT CTGGCGGGCG CGGGTATCGC CTCGACCCTG CCTCGCCTCT TGCGACCGCC
CGCTGGCTGG TTATTGGCGA TGCCCAGGGT GAGGCGAAGG GCGCGCGGAT CACCGCAGCG
GCGGCTCTCG AGGAAAGTGA TGTCACCCGC CACCTCGCGC ACCGGGTCGA GGAACGCCAT
ACGCTGTCGT GGAACGCAGC GGACGGCCGT GTCGAAGCGC GGCTGGAGCG GCGGCTGGGC
GCTATCGTGC TGGCACGCGT GCCCGATCCA GCGCCCGATG CAGAGGCCGC GGCGCGGCTC
CTGATCGATG AAGTGCGCTC GCGCGGGCTG GATCTTCTGC CGCTGGGGGA GGGCGCCAAG
GCGCTGCTCG TGCGGGCGGG CCATGCCGGC CTTGCGGCCT TGTCGGACGC CGCCTTGCTG
GACGATCTGG AGGCGTGGCT ACTGCCGCTG GTGAAGGGCA GGCGGGATCT GGCAGTCGGG
GCTGGCAGGC TGCACGATGC GCTGCTGGGG CGGCTGGACT GGAACGAACG GCAGATGCTC
GACAAGCTGG CACCTGCCGA GTTCCGATCT CCCGCGGGGA CGAGCCATGC GATCGACTAT
GGCCACGAGG GCGGACCTTG CGTGGAACTG CGCGTGCAGG CGCTGTTCGG GATCGACCGG
CATCCTTGCG TGGGCCAGCC GCCGCGCCCG TTGTTGTTGA GCCTGACCAG CCCCGGCGGG
AAGCCGATCC AGACGACGGC GGACCTCCCC GGCTTCTGGC GCGGGTCGTG GAAAGACGTC
TGCAAGGACA TGAAGGGGCG CTATCCCAAG CACCGCTGGC CCGACGAACC GTGGAGCGAG
GACCCCAGCC TGAAGACGAA GAACGCCTTC AATGCACAAA AGGGCCGGAC CTGA
 
Protein sequence
MSDLPIHSVL PDLLAALRQR ESAVLIAPPG AGKTTAVAPA LLAEPWCTGQ VIVLSPRRVA 
ARAAAERMAE MLGEEAGGTI GYVTRLDSRR SARTRVLVVT EAIFVATILD DPELSGVSAV
LFDEAHERHL DSDLGLALAV EAQGVLREDL RIVVMSATID GSRFAALLGD APVIESEGKA
HPLAIRWLGA RPDAKVEVAM ASAIQTAWRE EEGDILAFLP GVAQIERTAE TLAERLPQAL
ILPLHGQVEP GGQRAAIRRD PSGRRRIVLA TAIAETSLTL DGVSVVVDAG LSRRAEFDKA
AGVTRLVTTR ASQASAAQRA GRAARQGPGV AYRLWEEASH AGRPAFDPPE MVTSDLAPLA
LTLAQWGAGD PATMAWLDPP PAAAMAAAQG ALAALGALDK DRRITTHGRA MAKLPMEPAL
AHMLLFAAER GQAEEAARLA LLLQERGLGG RGEDLARRLD RWASERGSRA EASRKLAGRW
ARMAERLAPR GRAGEVPTGV LLAEAFPDRI ARARSVSGEE WLSSGGRGYR LDPASPLATA
RWLVIGDAQG EAKGARITAA AALEESDVTR HLAHRVEERH TLSWNAADGR VEARLERRLG
AIVLARVPDP APDAEAAARL LIDEVRSRGL DLLPLGEGAK ALLVRAGHAG LAALSDAALL
DDLEAWLLPL VKGRRDLAVG AGRLHDALLG RLDWNERQML DKLAPAEFRS PAGTSHAIDY
GHEGGPCVEL RVQALFGIDR HPCVGQPPRP LLLSLTSPGG KPIQTTADLP GFWRGSWKDV
CKDMKGRYPK HRWPDEPWSE DPSLKTKNAF NAQKGRT