| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1282 |
|---|
| Symbol | |
|---|
| ID | 3917913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 1324213 |
|---|
| End bp | 1325436 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640444018 |
|---|
| Product | isocitrate dehydrogenase |
|---|
| Protein accession | YP_496560 |
|---|
| Protein GI | 87199303 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0538] Isocitrate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00127] isocitrate dehydrogenase, NADP-dependent, eukaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0393913 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAGA TCAAGGTGAA GAACCCGGTC GTCGAGATCG ACGGCGACGA AATGACCCGG
ATCATCTGGG AATGGATCCG CGAACGCCTG ATCCTCCCCT ACCTCGACAT CGATCTCAAG
TACTACGACC TCTCGGTCCA GAAGCGCGAC GAGACGAACG ACCAGATCAC GATCGATTCC
GCCAACGCGA TCAAGCAGTA TGGCGTCGGC GTGAAGTGCG CCACGATCAC CCCCGACGAA
GCGCGCGTCG AGGAATTCAA CCTCAAGTCG ATGTGGAAGT CGCCGAACGG CACGATCCGT
AACATCCTGG GCGGCGTGGT GTTCCGCGAA CCCATCGTGA TCCAGAACGT GCCGCGTCTG
GTCCCCGGCT GGACCGACCC CATCGTCGTC GGCCGTCACG CTTTCGGCGA CCAGTACCGC
GCCACCGACT TCGTCGTGCC GGGTCCGGGC AAGCTGCGCC TCGTGTGGGA AGGCGACAAT
GGCGAAACCA TCGACCGCGA GGTGTTCAAC TACCCCTCGG GCGGCGTTGC CATGGCGATG
TACAACCTCG ACGATTCGAT CCGCGACTTC GCCCGCGCCT CGTTCAACTA TGGCCTCGGC
CTGGGTTGGC CGGTGTACCT TTCGACCAAG AACACGATCC TCAAGGCCTA TGACGGCCGC
TTCAAGGATC TGTTCCAGGA AGTGTTCGAC ACCGAAGGCT TCAAGGAAAA GTTCGCCGCC
GCCGGCATCG TCTACGAACA CCGCCTGATC GACGACATGG TCGCCTCTGC GCTCAAGTGG
TCGGGCAAGT TCGTCTGGGC GTGCAAGAAC TACGACGGCG ACGTCCAGTC GGACACCGTC
GCGCAGGGCT TCGGCTCGCT CGGCCTGATG ACCTCGGTCC TGATGACGCC GGACGGCAAG
ACCGTCGAGG CTGAAGCCGC GCACGGCACC GTGACCCGTC ACTACCGCCA GCACCAGCAG
GGCAAGCAGA CTTCGACCAA CCCGATCGCG TCGATCTTCG CCTGGACCCG CGGCCTGATC
TATCGCGGCA AGTTCGACGA GACGCCGGAA GTGGTGAAGT TCGCCGAAAC GCTGGAGCGC
GTCTGCATCG AAACCGTCGA GAGCGGCAAG ATGACCAAGG ACCTCGCGCT GCTCATCGGG
CCGGACCAGG CCTGGATGAC CACCGAGAAG TTCTTCGAGG CCATCGTCGA GAACCTCGAG
ACCGAAATGA AGAACTGGGC ATAA
|
|---|
| Protein sequence | MAKIKVKNPV VEIDGDEMTR IIWEWIRERL ILPYLDIDLK YYDLSVQKRD ETNDQITIDS
ANAIKQYGVG VKCATITPDE ARVEEFNLKS MWKSPNGTIR NILGGVVFRE PIVIQNVPRL
VPGWTDPIVV GRHAFGDQYR ATDFVVPGPG KLRLVWEGDN GETIDREVFN YPSGGVAMAM
YNLDDSIRDF ARASFNYGLG LGWPVYLSTK NTILKAYDGR FKDLFQEVFD TEGFKEKFAA
AGIVYEHRLI DDMVASALKW SGKFVWACKN YDGDVQSDTV AQGFGSLGLM TSVLMTPDGK
TVEAEAAHGT VTRHYRQHQQ GKQTSTNPIA SIFAWTRGLI YRGKFDETPE VVKFAETLER
VCIETVESGK MTKDLALLIG PDQAWMTTEK FFEAIVENLE TEMKNWA
|
|---|
| |