| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1269 |
|---|
| Symbol | secY |
|---|
| ID | 3917900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 1308286 |
|---|
| End bp | 1309653 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640444005 |
|---|
| Product | preprotein translocase subunit SecY |
|---|
| Protein accession | YP_496547 |
|---|
| Protein GI | 87199290 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0201] Preprotein translocase subunit SecY |
|---|
| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCAC GCGCCGATAA CATCGCCAGC AACCTCAATC TGGCCAACTT CTCCAAGGCA
ACCGAGCTCA AGAAGCGCAT CTGGTTCACG GTGGGCGCGC TCATTGTATT CCGGTTCCTC
AGCTTCGTGC CTCTGCCGGG CGTCAACCCG CTCATCATGG AGACGCTGTA CAACCAGACC
AGGGGCGGCG TTCTCGACAT CTTCAATGCC TTTTCGGGTG GTTCGCTCGA GCGCATGAGC
CTGATCGCAC TCGGCGTGAT GCCCTACATC ACCGCCTCGA TCGTCGTGCA GCTCGCCGCC
TCGCTCCATC CCGCGCTCGC GGCGATGAAG AAGGAGGGCG AAAGCGGACG CAAGAAGCTC
AACCAGTACA CCCGCTACGG CGCGGTGCTG CTGACCGCGA TCCAGGGTTG GGTTCTGGCT
TCGGGTCTCG AGGCCTATGG CGCCTCCAGC GGCCTCCAGG CCGTCGTGAA CCCCGGCCTT
CTCTTCCGCG TAGGCGCGGT CATTTCGCTT ATCGGCGGAA CGATGTTCCT GCTGTGGCTG
GGTGAACAGA TCACCTCGCG CGGGATCGGT AACGGCGTTT CGCTCATCAT CATGGCGGGC
ATCGTCGCGC AGATGCCGAA GTTCTTCGGC AACCTGTTCG AAGGCGGCCG GACGGGTTCG
ATCTCGCCGT TCCTGATCTT CGGCATCGTC ATCATGTTGA TCGCGCTTGT CATCGGCATC
TGCTTCCTCG AGCGGGCGAC ACGGCGATTG CTGATCCAGT ATCCCAAGCG CGCGACCCAG
CGCGGCATGA TGGCTGCCGA CCGCAGCCAC CTGCCGCTGA AGATCAACAC CGCAGGCGTG
ATCCCGCCAA TCTTCGCCAG CTCGCTGCTG CTGCTTCCGC TGACGATCAC GCAGTTCGCC
GGCAACTCCA TCTCGCCCGA CACGAAGATG GGCCAGGCGA TCGTGACGCT GAACCAGTAC
CTTGGGCACG GCAAGCCGCT CTACATGCTG TTTTACGCGC TCGGCATCAT CTTCTTCTCG
TTCTTCTACA CCGCGGTTGT CTTCAACCCC GAGGAGACGG CCGAGAATCT GAAGAAGAAC
GGGGGCTTCA TCCCGGGCAT CCGTCCCGGC AAGAACACGG CCAACTACCT CGACTATGTG
CTGACTCGCA TCACCGTGCT GGGCGCTGCA TACATCACCG TGGTCTGCGT CGTGCCCGAG
TTCATCATGG CCGAGACGGG CATGGGTACG CTGTTCTTCG GCGGCACCAG CTTGCTCATC
GTCGTGAACG TGACGGTCGA CACGATCACC CAGATCCAGT CGCACCTGCT GGCGCACCAG
TACGGCGACC TGATCAAGAA GGCGAAACTG AAGGGACGGC TGCGCTGA
|
|---|
| Protein sequence | MASRADNIAS NLNLANFSKA TELKKRIWFT VGALIVFRFL SFVPLPGVNP LIMETLYNQT
RGGVLDIFNA FSGGSLERMS LIALGVMPYI TASIVVQLAA SLHPALAAMK KEGESGRKKL
NQYTRYGAVL LTAIQGWVLA SGLEAYGASS GLQAVVNPGL LFRVGAVISL IGGTMFLLWL
GEQITSRGIG NGVSLIIMAG IVAQMPKFFG NLFEGGRTGS ISPFLIFGIV IMLIALVIGI
CFLERATRRL LIQYPKRATQ RGMMAADRSH LPLKINTAGV IPPIFASSLL LLPLTITQFA
GNSISPDTKM GQAIVTLNQY LGHGKPLYML FYALGIIFFS FFYTAVVFNP EETAENLKKN
GGFIPGIRPG KNTANYLDYV LTRITVLGAA YITVVCVVPE FIMAETGMGT LFFGGTSLLI
VVNVTVDTIT QIQSHLLAHQ YGDLIKKAKL KGRLR
|
|---|
| |