Gene Saro_1186 details

Gene Information

• Locus tag: Saro_1186
• ID: 3916483
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Novosphingobium aromaticivorans DSM 12444
• Kingdom: Bacteria
• Replicon accession: NC_007794
• Strand: +
• Start bp: 1228490
• End bp: 1230394
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 640443922
• Product: TonB-dependent receptor
• Protein accession: YP_496465
• Protein GI: 87199208
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG4206] Outer membrane cobalamin receptor protein

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.874956
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAGT ACCTGCTTTC CGTTTCCGCC GTCGCGTTCG CGTGCCCGGC GCTTGCGCAG 
GCCGCCAACG ATGTCGTCGT GGCCGACCGC CGTGCCGATC CCGCCGCAAT TACCGTTATC 
GCTACCGGTA GCGAGACCCT GGTCAGCCGA GTCGGCCAGC CGGTCACCGT CATCGCCGCC 
GACGAGATCC GGTCGATTCA GGGCCCTGAC ATCGCCCGCG TCCTCGAGCG CGTCCCCGGC 
CTCGCGCTCA CCCGCAATGG CGGTCCCGGA AGCTTTACCG GCGTGCGCCT GCGCGGCTCT 
GATGCCGAAC AGGTACTTGT CCTCGTCGAC GGCGTCCGCG TCGAGGATGT CTCGGCCCCC 
TCCGGCGGCT TCGATTTTGG CACGCTCACC CCCGGCGGGA TCGAGCGCAT CGACGTGCTG 
CGCGGCTCCA ACTCGATCGT CTGGGGCAGC GCCGCGATCG GCGGCGTGAT CGCCGTCCAG 
TCGCGCGAAC TCGATGGCAT CGAGGCCAGC GCCGAACTCG GCAATCACGA TACCTACACC 
GCTGACGCCG CCGCCGGCCT TTCTTCCGAC CGCGCCGCGC TTACCCTGAA CGGCGGCTAC 
AGCAGCAGCG ACGGCGTTTC GGCCGCTGCT TCGGGTACCG AACCCGACGG CTTCCGCCAG 
TGGCGCGTCG GCGGCCGGGG CCGCGTGAAC CTCACCGACG AGATCGCCGT TCTCGCCTCG 
GCCCGCTATG CCGACACGCG CACCGACATC GACGGCTTCG GTCCGCCGAC CTACGTGGAA 
TTCGGCGATA CGCCTGAATA CCAGACGACC CGCCAGGCCT CGGGCCGCGT CGGTCTGCGC 
TACACGGGCG CCGTGCTTAC CCTCAACACT GGCTTCGCCC TGTCTGACAC CAAGCGCGAC 
TACTACGACC CGACCTACTC CGCCGACCCC TCCTACGGCT ACAAGGGCCG CTCCGAGCGC 
GTCGACCTGA CCGGCCGCCT CAACCTCCCC GCCGATTTCA CGCTCGATTT CGGCGGCGAC 
AGCGAATGGA CGCGCTATTC CGGCACCTAC GACGCGCAGC AGAAGGCCCG GCTCACCAGC 
GGCCACGCCC TGCTCGGCTG GAGCAGCGCG CGCGCCAGCC TCGCTGCGGG CGTGCGCGTC 
GACGATCACA GCCGCTTCGG CACCGCGTGG ACCTTCGGCG CCAACGGTAC GCTTGAATTG 
GTGGACAGCC TGCGCCTGCG CGCCTCCTAC GGCGAAGGCT TCAAGGCCCC CACGCTCTTC 
CAGCTCCTGT CCGACTACGG CAACGCGGAT CTCAGGGCGG AACGCAGCAA GTCCTACGAC 
GCGGGTCTCG AATGGGGCAG CCGCACCGGC AAGCTCCACG CCGCCGTCAC GGTCTTCCGC 
CGCGACAGCC GCAACCTGAT CACCTTCGTC TCCTGCGCCA GCCTCGATGC CTGCGCCACG 
CGTCCCTATG GTCTCTACGA CAACGTCGGC CTGGCCCGCG CGCAGGGCGT CGAAGCCGAA 
CTCGGCGCCC GCCCGGTCGA TACGCTCCGC CTCCAGGCCG CCTACACCTA CCTCGAAACC 
GAGAACCGCA CCGCCGGCAC CGCCAACTTC GGCAATGACC TGGCGCGCCG TCCCGCCCAT 
GCGCTGACCC TGTCGAGCGA CTGGGCCCCT GTTGACTCCG GCCCGCTCGC CGGCTTCACC 
CTCGGCGCTG ACCTCCGCCT CGTGGGAGAC AGCTATGACA ACGCGTCGAA CACCCGCCGC 
CTCGATGGCT ATGCGCTGAC CACCGTGCGC GCCAGCTTCC CCCTTACCGA GAACGTCGAA 
CTCTACGGCC GCGTCGAGAA CCTTTTCGAC GTCGCCTACC AGACCGTGGC CGACTACGGC 
ACCTGGGGCC GCTCTGCCTT CCTCGGCATT CGCGCCCGCT ACTGA 

 

Protein sequence

MKKYLLSVSA VAFACPALAQ AANDVVVADR RADPAAITVI ATGSETLVSR VGQPVTVIAA 
DEIRSIQGPD IARVLERVPG LALTRNGGPG SFTGVRLRGS DAEQVLVLVD GVRVEDVSAP 
SGGFDFGTLT PGGIERIDVL RGSNSIVWGS AAIGGVIAVQ SRELDGIEAS AELGNHDTYT 
ADAAAGLSSD RAALTLNGGY SSSDGVSAAA SGTEPDGFRQ WRVGGRGRVN LTDEIAVLAS 
ARYADTRTDI DGFGPPTYVE FGDTPEYQTT RQASGRVGLR YTGAVLTLNT GFALSDTKRD 
YYDPTYSADP SYGYKGRSER VDLTGRLNLP ADFTLDFGGD SEWTRYSGTY DAQQKARLTS 
GHALLGWSSA RASLAAGVRV DDHSRFGTAW TFGANGTLEL VDSLRLRASY GEGFKAPTLF 
QLLSDYGNAD LRAERSKSYD AGLEWGSRTG KLHAAVTVFR RDSRNLITFV SCASLDACAT 
RPYGLYDNVG LARAQGVEAE LGARPVDTLR LQAAYTYLET ENRTAGTANF GNDLARRPAH 
ALTLSSDWAP VDSGPLAGFT LGADLRLVGD SYDNASNTRR LDGYALTTVR ASFPLTENVE 
LYGRVENLFD VAYQTVADYG TWGRSAFLGI RARY