| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1106 |
|---|
| Symbol | |
|---|
| ID | 3916402 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 1152536 |
|---|
| End bp | 1154830 |
|---|
| Gene Length | 2295 bp |
|---|
| Protein Length | 764 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640443841 |
|---|
| Product | periplasmic sensor diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_496385 |
|---|
| Protein GI | 87199128 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0307907 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGACGG GACCCTTCAT TCGGCAACGC CGGTCGCGGC AGACAGCCGG CGCGGCGAGC
GCGGGGTGGA TCGTGGCAGC CACGTTCGTC GCCCTGCTGG CGCTTACGAC CGCCCTGATC
GTGGCGTTCC GAAATTCGAC CAACATCGCT GACCACTTCG CCCGCACCGA AGAACAGCGG
CTGGTCGAAC GCTTCATGGA GCGCACCGAG AAACAGATCC TCGAAGCGGA CAAGCTGCAG
GTCGTGTGGG ACGATGCCGT CACCATGCTG AACAGCCCCA AGGCCGAGGT GTGGGCGCGC
AACTTCCTGG CAGGTTACTT CTGGGGAAGT CACCGCATCG ACCGCATATT TCACGTCAGG
TTCGACGGCA GCCTCGTACG CTGCTGGCAC GGCGTGAAAC TCTCGCAGGA CTGCCGCTAC
CGGCCCCTTT CCAGGACGAT TTCGGGCCTG ATTCGCCAGT CCCTGAAAGA CCAGACCCAG
CGCGGGCAGG TGCGCGATTG GCGAAAGCAC GGCAGCGTGA ACTGGCCCTA CGATTCCAAG
GGCTTGCCCA TCGGACTCGG CCAGTCGTCG ATTGCCAGCG TCGAAGGCCA GCCGGCCATC
GTCGCGGTGG CTTCCGTCGT GCCCGACGTC ACGCCTTCAT TGCTCCAGGC AGAGCCCGAC
TACATCGTCC TCGTGCGCTT CATCGACGAG CGCATCATAT CGGACCTGCA TGAATCCCTG
GTGCTCGATG ACGTGCGCTT CGAGACTTCG GCGACCGACG ACAAGAATCG CAATTCCCTG
GCGATCAGGG ACCTGCACGG AGACCGGATC GGCTGGATAT CGTGGCTGTC AAAGCCGCCG
GGACCGGCCA TCCTGCGGCA GACGGCGCCG CTGCTGGCGG TCTACATCCT GTTCTTCGTC
GGCGTCGTGG CGGGCGGGGC GATCATCGTG CGCCGGATGC GCCGGACGAC AAGCGAACTG
ATCGCCAGCG AAGCGCAGGC GCAGCACAAT GCCCTGCACG ATGCCATGTC GGGCCTGCCG
AACCGCGCCC ACTTCATGCA ACGCCTGCGG CAGGAACTGA ACGCCTGCGT CGAACGACGC
GAACTGGGCG ACGTCTTCGT CGCCTATGTC GACATCGACC GGTTCAAGAT CGTCAACGAT
ACGCTGGGGC ACCATGTAGG CGACGAACTG GTGCGGCAGG TGGCGCTTCG CCTGCGTCGC
TCGCTCCCGC CAGGCGACTT CCTGTCGCGC TTCGGCGGCG ACGAATTCGT GCTCATGCGC
CGCACCACGG GTGGCCGCGC GGCGGCCGAC ATGCTTGGCA AGCAGATCAT GGCATTGACC
CGCGAGCCGT TCGTCATTTC CAGCAACAAC CTGGAAGTGA GCCTTTCGTG CGGGATAAGC
TGGGGCCCCG AACAGAGCGA GGACCCCGGC GAACTCCTCC GGCGGGCGGA CATCGCTCTC
TATCGCGCGA AGCAACGGGG CCGCGCGCGC TATCGCCGCT TCACGCGCGA CATGGATGCT
TCGGTCAAGC TGCGCCGCGA GATGGAAGTC GAACTGCGCC GCGCGATCGT CCGCGACGAA
CTGACGCTTG CCTACCAGCC CATCGTCCAT GCCGGGAGTG GCGCCATCGA GGGTTTCGAG
GCACTGCTGC GCTGGCCCCA CCCCGAGCGC GGCTCGATCA GGCCCGGCCT GTTCGTGCCT
GTCGCCGAAC AGGCGGGCAT GATGGTACCG CTCGGGTCAT GGGTGCTGCG ACGCGTGTTC
ACCGAAAGCC GGCAATGGCC GGATTGCGAC ATTTCGGTGA ATCTTTCGCC CCTGCAGATC
ATGTCGAGCG ACTTCCTCCA GGCGATGGAC GAACTGGTGC GCGAGACCGG GGCCGACCCG
CGGCGTTTCA TCCTCGAGGT CACCGAAGGG GTCATGCTCG ACCGCAGCGA CCATGTGCTC
GACGTGCTGA AGGGGCTCAA CTACCGGGGC TTCCGCATCG CGCTCGACGA TTTCGGCATC
GGCTATTCCT CGCTCAGCTA CCTGCGCTCG TTCCAGTTTG ACCGGATCAA GATCGACAGG
TCGTTCGTCC AGAACATCGA GGGCGATCTC GACGCCCATT CGATCCTGAA GGCCATCGTC
TCGCTCGGGC ATACCTTGCG CATGAAGGTC GTGGCGGAAG GGGTGGAGAC GCCGATGCAG
CGCGCGCTGG TCCAGGCAGC CGGCTGCCAG ATGATCCAGG GACACCTGTT CTGGGAGGCG
CTTCCGGTCG ACGAGGCGAA GGCGCTGGTC CGGCCCGCGA AAGTCCGCGG CCTGAGCAAG
GTCCGCGTCG GCTGA
|
|---|
| Protein sequence | MGTGPFIRQR RSRQTAGAAS AGWIVAATFV ALLALTTALI VAFRNSTNIA DHFARTEEQR
LVERFMERTE KQILEADKLQ VVWDDAVTML NSPKAEVWAR NFLAGYFWGS HRIDRIFHVR
FDGSLVRCWH GVKLSQDCRY RPLSRTISGL IRQSLKDQTQ RGQVRDWRKH GSVNWPYDSK
GLPIGLGQSS IASVEGQPAI VAVASVVPDV TPSLLQAEPD YIVLVRFIDE RIISDLHESL
VLDDVRFETS ATDDKNRNSL AIRDLHGDRI GWISWLSKPP GPAILRQTAP LLAVYILFFV
GVVAGGAIIV RRMRRTTSEL IASEAQAQHN ALHDAMSGLP NRAHFMQRLR QELNACVERR
ELGDVFVAYV DIDRFKIVND TLGHHVGDEL VRQVALRLRR SLPPGDFLSR FGGDEFVLMR
RTTGGRAAAD MLGKQIMALT REPFVISSNN LEVSLSCGIS WGPEQSEDPG ELLRRADIAL
YRAKQRGRAR YRRFTRDMDA SVKLRREMEV ELRRAIVRDE LTLAYQPIVH AGSGAIEGFE
ALLRWPHPER GSIRPGLFVP VAEQAGMMVP LGSWVLRRVF TESRQWPDCD ISVNLSPLQI
MSSDFLQAMD ELVRETGADP RRFILEVTEG VMLDRSDHVL DVLKGLNYRG FRIALDDFGI
GYSSLSYLRS FQFDRIKIDR SFVQNIEGDL DAHSILKAIV SLGHTLRMKV VAEGVETPMQ
RALVQAAGCQ MIQGHLFWEA LPVDEAKALV RPAKVRGLSK VRVG
|
|---|
| |