Gene Saro_1087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_1087 
Symbol 
ID3916383 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand
Start bp1129961 
End bp1130929 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content68% 
IMG OID640443822 
Product4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
Protein accessionYP_496366 
Protein GI87199109 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
[TIGR01552] prevent-host-death family protein 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGCCA GCTTGCCAGA CGCCGCGCCC CAGGGCGCCC CGCTCCGCCT CCTGATTGCC 
GCCCCGCGCG GGTTCTGCGC GGGGGTCGAC CGCGCGATCG AAATCGTCGA GCGCTCGCTC
GAACGCTTTG GTGCACCGGT CTACGTCCGG CACGAAATCG TCCACAACCG CTATGTCGTC
GACGGGCTCA AGGCCAAGGG CGCGGTCTTC GTCGAGGAAC TGGACCAGGT GCCCGATGGC
GCGCCAGTCG TCTTTTCGGC CCACGGCGTG CCCAAGGTCG TGCCCCAGAC CGCGACCGAG
CGCGGGCTCG ACTGGCTCGA CGCCACCTGC CCGCTGGTCA GCAAGGTCCA CCGCCAGGCC
GAGCGGCAGG TAGAGGCCGG GCGCCATATC CTGTTCGTCG GCCACAAGGG GCACCCCGAA
GTGATCGGTA CGATGGGCCA GGTCCCCGAG GGCACGATCT CACTGGTCGA GACGGTCGAG
GACGTCGCAG GCCTCGACTT TCCCGAGGGC ACGCCGCTCG CCTTCCTGAC GCAGACCACG
CTTTCGGTGG ACGACACGGC AGAGATCGTC GCCGCGCTCC ACACCCGCTT CCCGCAAATC
GTCGGGCCCA AGGCAGAGGA CATCTGCTAT GCCACGTCCA ACCGCCAGGC CGCGGTCAAG
GCAATCGCGG GCGAGTGCGA CCTGCTGCTG GTGATCGGCG CCCCGAACAG CTCCAACTCG
CTGCGGCTGG TCGAAGTGGC TGAACGGCTC GGCACCCGCT CGCGCCTGAT CCAGCGGGCG
AGCGAGATCG AACCTGAATG GCTCGATGGC GTCGAAACGC TCGGTCTCAC CGCCGGCGCC
TCGGCACCCG AAGTGCTGGT GCGCGAAGTC GTCGCCCGGA TCGCCTCGCT CCGGCCGGTC
ACCGAGGAAA CGGTGACCAC GGCCGAAGAG AAGATGGTGT TCAAGCTGCC GCGCCAACTG
GTCGACTGA
 
Protein sequence
MNASLPDAAP QGAPLRLLIA APRGFCAGVD RAIEIVERSL ERFGAPVYVR HEIVHNRYVV 
DGLKAKGAVF VEELDQVPDG APVVFSAHGV PKVVPQTATE RGLDWLDATC PLVSKVHRQA
ERQVEAGRHI LFVGHKGHPE VIGTMGQVPE GTISLVETVE DVAGLDFPEG TPLAFLTQTT
LSVDDTAEIV AALHTRFPQI VGPKAEDICY ATSNRQAAVK AIAGECDLLL VIGAPNSSNS
LRLVEVAERL GTRSRLIQRA SEIEPEWLDG VETLGLTAGA SAPEVLVREV VARIASLRPV
TEETVTTAEE KMVFKLPRQL VD