| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1079 |
|---|
| Symbol | |
|---|
| ID | 3916375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 1122781 |
|---|
| End bp | 1124400 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640443814 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_496358 |
|---|
| Protein GI | 87199101 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.103165 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCCG CGCGACAGAA CCAGATTGCG AAGGTCCGCA CGATGAACCG CCGAATCTCC
ACTTCGCTCC TCACGGCCGC CGCGCTCGCG CTGCCGCTGG CCCTGGTCCC GGCAGGCGCC
CCGCTCCATG CCCAGGGCAT GACCAGCCCG GCGCGCACGG TGACCATCTC CATCGGTCGC
GGCGAACTGG TCACGGTTCC GGGCCGCATG GCCGACGTCT TCGTGGCCGA CGAGAGGGTC
GCCGACGTCC AGGTCAAGTC GACCAACCAG CTCTATGTCT TCGGCAAGGC CGGCGGCGAG
ACGACGATCT ATGCAAGCAA CGCCAAGGGC GATGTCGTGT GGTCGGCCAA TGTGCGGGTG
GGCAACAACC TCGACTCGAT CGACCAGATG CTGCACCTCG CCATGCCCGA AGCGCGCATC
AACGTGGCGA CGATGAACAA CACGGTCCTG CTCACCGGCA CCGTGGCAGC GCCCGAGGAT
GCCGCCGAGG CCGAACGCCT GGTCAAGGCT TTCGTCGGCG AGAAGACCAA CGTCATCAGC
CGCCTCAAGA TGGCAACTCC GCTCCAGGTC AGCCTGCACG TGAAGTTCGC CGAGGTGAGC
CGTTCGCTGG TGCGCACGCT GGGCGTCAAC CTCACCACGA TCGACGGCAC CGGAGGCATC
AAGTTCGGCA TCGGCCAGGG CAGCACGACC GGCTCCGTGG CGACCAACCG CAACCTGCCG
TTTGGCGTCG GCACCAGCTC GACCTCGGGC TACATCCTCG ACCCGACCGG TGCCACGTCC
AACTACGTGT CCGCGACTGG AACGTCGGTC GCTGCTAGCA GCAGCGGCAC GACCATTGCG
GGCATGGGCA AGCTGCTGGG CCTCGACCTT CTCGCCGCGC TCGATGCCGG TGAGACAATC
GGTCTGGTGA CCACGCTGTC GGAACCGAAC CTGACTGCCA TTTCCGGCGA AACTGCCGAA
TTCCTGGCGG GTGGCGAATA CCCGATACCG GTTTCGCAGG GTCTCGGCAC GACGTCGATC
GAGTACAAGA AGTACGGCGT GAGCCTGGCC TACACGCCGA CCGTGCTGGC CAACGGCCGC
ATCTCGATCC GCGTGCGTCC CGAAGCCTCG GAGCTATCCA GCACCGGGGC ACTCAAGCTC
GACAGCGTCG AGATTCCCGC GCTGACCGTT CGCCGCGCCG AAACCACGGT GGAACTCGGT
TCGGGACAAT CGTTCATGAT CGCCGGCCTG CTTCAGAACG GTGCGCAGAA CGCACTGACC
AAGATGCCTG GCGCGGGCGA CATCCCGATC CTTGGCTCGC TCTTCCGCTC GACCAGCTAC
AAGAAGGGCG AGACCGAACT GGTGATCGTG GTCACCCCCT ACCTGGTGAA TCCGGTCAAC
GCGAACGACA TCAAGCTGCC GACCGACGGC TTCCAGAGCC CGAACGAAAT CCAGCGCCTG
CTCGGCCACA TGGAAAGCGA CGGCGTAACC GGCGGCGACC GGCCCAAGCC GACGCAGAAG
GAAGGCACGA CTCAGCAGGG CCCCAAGGTG GGCGAACTCG ACGTGCCCAC CACGCCGGCC
GACCGCAAGA AGGTCGCCGC CGCGCCTGCC GCCGCCGAAC CCGGCTTCAG CATCCAGTGA
|
|---|
| Protein sequence | MKPARQNQIA KVRTMNRRIS TSLLTAAALA LPLALVPAGA PLHAQGMTSP ARTVTISIGR
GELVTVPGRM ADVFVADERV ADVQVKSTNQ LYVFGKAGGE TTIYASNAKG DVVWSANVRV
GNNLDSIDQM LHLAMPEARI NVATMNNTVL LTGTVAAPED AAEAERLVKA FVGEKTNVIS
RLKMATPLQV SLHVKFAEVS RSLVRTLGVN LTTIDGTGGI KFGIGQGSTT GSVATNRNLP
FGVGTSSTSG YILDPTGATS NYVSATGTSV AASSSGTTIA GMGKLLGLDL LAALDAGETI
GLVTTLSEPN LTAISGETAE FLAGGEYPIP VSQGLGTTSI EYKKYGVSLA YTPTVLANGR
ISIRVRPEAS ELSSTGALKL DSVEIPALTV RRAETTVELG SGQSFMIAGL LQNGAQNALT
KMPGAGDIPI LGSLFRSTSY KKGETELVIV VTPYLVNPVN ANDIKLPTDG FQSPNEIQRL
LGHMESDGVT GGDRPKPTQK EGTTQQGPKV GELDVPTTPA DRKKVAAAPA AAEPGFSIQ
|
|---|
| |