| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1031 |
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| Symbol | |
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| ID | 3915813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | + |
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| Start bp | 1069183 |
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| End bp | 1071492 |
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| Gene Length | 2310 bp |
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| Protein Length | 769 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640443765 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_496310 |
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| Protein GI | 87199053 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGTCA TTGGCCTTCG AGATCCCGTC GAGGGTGATT GGGGCCGGTT GCGCGGCCTG
CAGTATTCCA GCCTCGCCCG CCTGACCTTC GCGCGGCTCA TGGCGCATGC GGTCGCCGCG
CTGCTCGTGT TGCAGACCTT TGGCGGACGG GTTCATCCCG CGCTTCTCGT CGGCTGGATG
GCGCTGCTGG TCAGCGTGCT TATCTCGGGC GCGCGGTTCG ACCGCAGTCT AGTCGATGCC
GACCGGCGGC GCGTCAGCAG GCAGGAGATG CATCGCCAGA CGATCAGCTC GCTCTTCGTC
GCACTCGCCT GGGCGTTGCC CATGCTGGTA TTCGGTCCGT TTGGCGATGC TGCCGGCCGC
ATGACCTTGT GGACGGTGCT TGCCATGCTG ATGACTGGCA TGGCCGTCAC GTTCGCGGCG
ATGCCGATGG CGACCGTGCT CTTTTCCGGC GTGGTCGGCG TCTCGGCGGT CGCGGCATTC
CTGTTCGAGG GCGAATACAC CGCAGCGGCC GTGTCGACCG TCTTCGTGGT GATCGTCAGC
GTCGGCGCGG TCGAGGTCGC GCGGACCTTC CTCGGTGCGC GCGTGGCCGA AGCGGGGATG
GCGGAAAAGA GCGAGGTTGT GTCGCTCCTG CTGCGCGAGT TCGAGGAAGG CGATGCCGAC
TGGCTGTGGC AGGTCGATGC CAACCGCCGC ATCCGTTCGG TCAGTCCGCG CTTCGCCTTC
GCGCTTGGCG CCGATCCCGA GGATCTTGAA GGCAAGCCGC TGATCCAGGT CATCGCCGGC
CCGGCCTGGG AAGATGGACA CTTCCATTCC AGTCTCCACG ATCTTGCCGA GCGGCTGAAG
CGGCGCGAGA GCTTTTCCAA TCTGCTCGTC CGGGCGACAC TTCACGGCAG CCACCGCTGG
TGGGAACTCT CGGCGTCGCC CAAGGTCGAC GACAACGGGA CGTTCGTGGG CTTCCGCGGC
GTAGGTTCCG ACGTGACCGA GCAGCGCGAA AGCGCCGAAA AGATCGCCTA TCTCGCCCGC
TATGACACGC TCACCGGGCT GCCCAACCGC CTGATGCTTA CCGAGGCGCT TGGCGATGCG
ATGGGCTATT CCGAGAAGTG GCGGTCGAAC TGCGCCTTCC TGATGATCGA CCTCGATCGC
TTCAAGGCGG TCAACGATAC GCTGGGTCAC CTGGTGGGCG ACCAGCTCCT CGCCATGGTC
TCGGACCGCA TGACGCGCAT CATCAAGGAT GGCGAAGTCT GCGGTCGTCT GGGGGGTGAT
GAGTTCGCCG TGGTCGTGCG CGACGTTGCG GACAGCCAGC GCATCGCCGA GCTTGCAGAT
GCGATCATCG CCACCCTGTC GCAGCCCTAC GAAGTCGATC ACCACATGCT CTATGTCGGC
GCCAGCGTCG GCTCGGCGAT CGGCCCGCGC GATGGCGCTA CGGTCGAGAC CCTGCTACGC
AACGCCGACC TCGCGCTCTA TCGGGCCAAG GACGAGGGCG GGGGGAGCCA CTGCACGTAC
GAACCCGCAC TCCACGCCCA CGCCGAGGAG CGCCGCAAGC TCGAGTTCTC GCTGCGCCAC
GCTCTCGAAC GCAGCGAATT CGGTCTGGTG TTCCAGCCTG TCGTCGATGC GACAAGCGAA
GCCGTGGTAA GTTTCGAGGC GCTGCTGCGC TGGAACAGCG AGGAGCACGG CTCCGTCAGC
CCGGCGAAGT TCATTCCGCT GGCCGAGGAC ACCCGCCTGA TCGTGCCGAT CGGCGAATGG
GTGCTGCGCA TGGCTTGCCA GGAGGCGATG AACTGGCCGC CGCACGTCAA GATCGCGGTC
AACGTATCGG GCGAGCAGTT GCTCGATCCC TACTTTGCCG AAACCGTCGT AGGTGCGCTG
GCGGCAAGTG GGTTGCCCCC GCACCGGCTC GAGATCGAGG TGACCGAGAG CATCTTCGTG
CGCGATGCCA CGGTCGCGCA GATGACCCTC GAGAACCTCA TGGGCATCGG GTGCGGCGTC
GCGCTTGACG ATTTCGGCAC CGGATACTCG TCGCTCGGCT ACCTGCGAAA GATGCGCTTC
TCGACCATCA AGGTCGACCG CAGCTTTGTT CAGGGGGCCG CCAAGGACAA CCCCGAGAGC
CTTGCGATCG TGCGCGCTGT TGTGGCGATG GCCGACAGCC TCGACATGTC GACCACAGCC
GAGGGCGTCG AGACCGAGGC CGAGCTGGAA ACGATCCGCC GCCTCGGCTG CAAGAAGATC
CAGGGCTACT ACTTCGGTCG CCCGATGAGC GCGGCGGATG CGCGCGGCCT GTTCAGCCAG
ACCCGCATCC TCGAGCGGAA GGCGGGTTAG
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| Protein sequence | MAVIGLRDPV EGDWGRLRGL QYSSLARLTF ARLMAHAVAA LLVLQTFGGR VHPALLVGWM
ALLVSVLISG ARFDRSLVDA DRRRVSRQEM HRQTISSLFV ALAWALPMLV FGPFGDAAGR
MTLWTVLAML MTGMAVTFAA MPMATVLFSG VVGVSAVAAF LFEGEYTAAA VSTVFVVIVS
VGAVEVARTF LGARVAEAGM AEKSEVVSLL LREFEEGDAD WLWQVDANRR IRSVSPRFAF
ALGADPEDLE GKPLIQVIAG PAWEDGHFHS SLHDLAERLK RRESFSNLLV RATLHGSHRW
WELSASPKVD DNGTFVGFRG VGSDVTEQRE SAEKIAYLAR YDTLTGLPNR LMLTEALGDA
MGYSEKWRSN CAFLMIDLDR FKAVNDTLGH LVGDQLLAMV SDRMTRIIKD GEVCGRLGGD
EFAVVVRDVA DSQRIAELAD AIIATLSQPY EVDHHMLYVG ASVGSAIGPR DGATVETLLR
NADLALYRAK DEGGGSHCTY EPALHAHAEE RRKLEFSLRH ALERSEFGLV FQPVVDATSE
AVVSFEALLR WNSEEHGSVS PAKFIPLAED TRLIVPIGEW VLRMACQEAM NWPPHVKIAV
NVSGEQLLDP YFAETVVGAL AASGLPPHRL EIEVTESIFV RDATVAQMTL ENLMGIGCGV
ALDDFGTGYS SLGYLRKMRF STIKVDRSFV QGAAKDNPES LAIVRAVVAM ADSLDMSTTA
EGVETEAELE TIRRLGCKKI QGYYFGRPMS AADARGLFSQ TRILERKAG
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