| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1001 |
|---|
| Symbol | |
|---|
| ID | 3915783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 1045340 |
|---|
| End bp | 1046143 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640443735 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_496280 |
|---|
| Protein GI | 87199023 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.425244 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCA GCAAGCTTTT CAGCCTTGAA GGCCGCGTAG CGGTCGTCAC CGGTGGTTCG
CGAGGGATCG GCGAGATGAT TGCCGAGGGT TTCATCGCCG CCGGTTGCTC GCGCGTCTAC
ATCACCGCGC GCAAAGCCGC CGTGGTCGAG GAAACCGCTG CCCGCCTTGG CGAGAAGTGC
ATCGCCCTGC CAGGTGACAT CTCCAACGTC GCCGGGATCG AACAGCTCGC CGCCGACCTC
GCCGCGCGCG AGGACAAGCT CGACATTCTC GTCAACAACG CCGGCGCGGC GTGGGGCGCG
GATTTCGAGG ATTTTCCTGA ACTGGGCTGG GACAAGGTCA TGGACCTCAA CGTCAAGACC
CCGTTCTTCC TCACCCAGAA GCTGCATGGC CTGCTCAAGG CCGCTGCCAG CAAGGAACAG
CCCGCCAAGG TCATCAACAT CGCCTCGGTG GATGGCCTGC GCCTCAACCC CTGGGAAACC
TACAGCTACC AGGCTTCGAA GGCGGCGGTC GTTCATCTGA CGAAGCGAAT GGCGGCACGC
CTGGTCAAGG ACCAGATCAT TGCGAGCTGC ATCTGCCCCG GCGCCTTCCC CTCGGAAATG
AACAAGGCGG CAGCGAAGAA TCCGGAAGCC TCGTCGCGTG GCATTCCGCT GAAGCGTATC
GGCACGATCG AGGACATGGC CGGCGGCGCG ATCTTCCTTG CCAGTCGCGC GGGCGACTAT
GTCGTCGGCA CGCCGCTTCC CATCGACGGC GGCATCGTCA ACGCGTGGAT TCCGGAAAAC
GCCGTCGATC CGAGCGGACA CTGA
|
|---|
| Protein sequence | MDFSKLFSLE GRVAVVTGGS RGIGEMIAEG FIAAGCSRVY ITARKAAVVE ETAARLGEKC
IALPGDISNV AGIEQLAADL AAREDKLDIL VNNAGAAWGA DFEDFPELGW DKVMDLNVKT
PFFLTQKLHG LLKAAASKEQ PAKVINIASV DGLRLNPWET YSYQASKAAV VHLTKRMAAR
LVKDQIIASC ICPGAFPSEM NKAAAKNPEA SSRGIPLKRI GTIEDMAGGA IFLASRAGDY
VVGTPLPIDG GIVNAWIPEN AVDPSGH
|
|---|
| |