| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_0540 |
|---|
| Symbol | benD |
|---|
| ID | 3918670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 589371 |
|---|
| End bp | 590162 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640443270 |
|---|
| Product | 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase |
|---|
| Protein accession | YP_495821 |
|---|
| Protein GI | 87198564 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAGT ACGGGGCGCA TTTCGCGGGT CGTTTTGACG GCAAGGTCAT GGTCGTGACC
GGGGCGGCGC AGGGGATCGG GCGCGGCGTG GCGGAGCGCG CGGCTGCCGA GGGCGCACAG
GTCCTGCTGG TTGATCGTGC CGACTTCGTG ACAGATGTTG CGGCAGCGAT CGGGCCGAAG
GCGCATGCGT TCGTGGCAGA CCTCGAGGGG CATGCGGGCG CTGCGGCCGC CGTGGCGCAC
GGGCTTGCGG TTTTCGGTCG GATCGACATC CTGATCAACA ACGTCGGCGG CGCGATCCGC
ATGCGGCCTT ACGATCAGTT CACGTCCGAG CAGATCGATG CCGAAATCCG CCGCTCGCTG
ATGCCGACGC TCTACTGCTG CCATGCGGTG CTGCCGCCGA TGCTGGCGCA AGGGGCGGGG
ACGATCGTCA ACGTATCGTC CAATGCCACG CGTGGGATAC GGCGCGGGCC GTACTCGGCG
GCGAAGGGCG GGATCAACGC TCTGACCCAG AGCCTCGCCA TGGAGTATGG CGAGCAAGGC
ATCCGCGTCG TCGCCACGGC GCCGGGCGGC ACGAGTGCGC CCGCACGCAA GGTTCCGCGC
AATGCCGAGG GCGACAGCGC GCAGGAGCAG GCTTGGATGG CAGAGGCGGT GGAGCAGGTG
ACCCGGTCCA CCTTCATGAA ACGCTATGGC ACGCTCGAGG AGCAGATCGC ACCGATCCTG
TTCCTCGCGT CCGACGAGGC AAGTTACATT ACGGGAACCG TCCTGCCCGT TGCGGGCGGT
GATCTCGGCT GA
|
|---|
| Protein sequence | MSEYGAHFAG RFDGKVMVVT GAAQGIGRGV AERAAAEGAQ VLLVDRADFV TDVAAAIGPK
AHAFVADLEG HAGAAAAVAH GLAVFGRIDI LINNVGGAIR MRPYDQFTSE QIDAEIRRSL
MPTLYCCHAV LPPMLAQGAG TIVNVSSNAT RGIRRGPYSA AKGGINALTQ SLAMEYGEQG
IRVVATAPGG TSAPARKVPR NAEGDSAQEQ AWMAEAVEQV TRSTFMKRYG TLEEQIAPIL
FLASDEASYI TGTVLPVAGG DLG
|
|---|
| |