| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_0447 |
|---|
| Symbol | |
|---|
| ID | 3918315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 490351 |
|---|
| End bp | 491019 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640443176 |
|---|
| Product | pseudouridylate synthase |
|---|
| Protein accession | YP_495729 |
|---|
| Protein GI | 87198472 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.129188 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGATT TCTCCATCCT GTTCGAAGAC GGCGAGGCGC TGGTCATCGA CAAGCCGGCT
GGCCTCCCGC TCGATCGTCC TCGCGCCGGT GGCGACAGCC TCGAGAACCA TCTCGATGCC
CTGCGCTTCG GCTTCCAGCG CGAACCTTTC CCCGTTCACC GTCTCGACCG CGACACCTCT
GGCTGCCTGT TGCTGGCGCG CAATCCCAAG GCGCTGAAGC GTTTCTCTGC CGCCTTCGAG
GCGCGCGAGG TGGAGAAGGT CTATCTAGGC ATCGTCGCGG GCGAGGTTAC GGGCGAGAAG
GGTACCATCG ACCTGGCGCT GTCCAAGGTC AGCTCCGCCG AGAAGGGCTG GCGGATGATC
CCGGCCAGAA AGGGCAAGCC GGCACTTACC CACTGGCGCG TCGTCGCGCG AAAGCCGGGC
CTCACGCTCG TCGAGTTCCG GCCCGAAACC GGCCGCACCC ACCAGATCCG CATCCACGCG
CTGGCCGGGC TCGGCCATGC CCTCGTCGGG GATCCGGTCT ATGGCGATGG CAAGGGTGCG
TGGCGCACCA TGCTCCATGC CTCGGATCTA GTCGTTCCGC GCGCGGGCAA GGCGCCGATC
GTCGCCCACG CACCATTGCC GCTCGATTTC GACGCCTTCG GCTTCGAGCT TCCGGATGCC
GGGGCCTGA
|
|---|
| Protein sequence | MIDFSILFED GEALVIDKPA GLPLDRPRAG GDSLENHLDA LRFGFQREPF PVHRLDRDTS
GCLLLARNPK ALKRFSAAFE AREVEKVYLG IVAGEVTGEK GTIDLALSKV SSAEKGWRMI
PARKGKPALT HWRVVARKPG LTLVEFRPET GRTHQIRIHA LAGLGHALVG DPVYGDGKGA
WRTMLHASDL VVPRAGKAPI VAHAPLPLDF DAFGFELPDA GA
|
|---|
| |