Gene Saro_0315 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_0315 
Symbol 
ID3915557 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand
Start bp339464 
End bp341929 
Gene Length2466 bp 
Protein Length821 aa 
Translation table11 
GC content67% 
IMG OID640443044 
Productconjugal transfer ATPase TrbE 
Protein accessionYP_495597 
Protein GI87198340 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3451] Type IV secretory pathway, VirB4 components 
TIGRFAM ID[TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCAGCT TGCGCGAATA CCGGAACAAG GCTGACCGAC TTGCCGACTT CCTGCCCTGG 
GCCGCGCTGG TCGCGCCCGG CGTGGTGCTC AACAAGGACG GCAGCTTCCA GCGCTCAGCC
CGCTTCCGGG GGCCGGATCT AGACAGTGCC ACGCCGGCTG AGCTGATCGC CACCACCGCG
CGCCTCAACA GCGCGCTGCG CCGCCTCGGG TCGGGCTGGG CGATCTTCGT CGAAGCCGTG
CGCCGCCCGG CGCATGACTA CCCGGAAAGC GACTTCCCCG ACGCGGCCTC GGCCCTCGTC
GAGCGCGAGC GCGCAGCCCA GTTCGCCGAA GAAGGTGCCC ATTTCGAGAG CGCCTATTAT
CTGACCCTCG TCTGGATGCC TCCCGCCGAG GATGCCGCGC GGGCCGAGAG CTGGCTCTAT
GAAGGCAAGG CCCACCAGGG CGTGCAGGCG CGTGAACTGC TCGAGCTGTT CAGCGACCGC
ACCGACCGGT TGCTGCGCCT CATCGAAGGC TTCGTGCCCG AAGCCGCCTG GCTCGACGAC
AGTGAGACGC TGACATACCT CCACAGCTGC ATCTCGACCC GCAATCATCG GGTGCGCGTC
CCCGAGACGC CGATGCATCT CGATGCGCTG CTGGCCGACG AACCGCTGAC CGGAGGGCTC
GAACCCAGGC TGGGCCGCGC CCATCTGCGC ACCCTGACCG TGGTTGGCTT TCCGAGTGCG
ACGTTCCCGG GCATCCTCGA CGAGCTCAAC TCGCAGGGCT TCGCTTACCG CTGGTCGACT
CGGGCGATCA TGCTCGACAA GACCGACGCG GCGAAACTGC TGGGCAAGAT CCGCCGCCAG
TGGTTCGCCA AGCGCAAGTC GGTCGCCGCG ATCCTCAAGG AGGTCATGAC CAACGAGGCC
TCGGCGCTGC TCGACAGCGA CGCTTCGAAC AAGGCCGCCG ATGCCGATGC GGCACTGCAG
GAACTGGGCT CGGACCTTCA GGGCATGGCC TATGTCACGG CCACGGTCAC CGTCTGGGAC
GAAGATGCCG CCATGGCGGC GGAAAAGCTC CGCCTCGTCG AGAAGGTTAT CCAGGGCCGC
GATTTTACCG TGATCGTCGA GGGCATGAAC GCGCTCGAGG CCTGGCTCGG CTCGCTGCCC
GGCCATGTCT ACGCCAATGT CCGCCAGCCT CCGATCTCGA CCCTGAACCT CGCCCACATG
ATCCCGCTCT CGGCGGTCTG GGCCGGGCCG GAATGGGACG CCCATTTCAG GGCGCCGCCG
CTGTTTTATG CCCGCACCGA AGGCTCGACC CCGTTCCGCT TTGCACTCCA TGTTGGCGAT
GTCGGCCATA CGCTGATCGT CGGACCGACC GGAGCGGGCA AATCGGTGCT GCTCGCGCTG
ATGGCGCTGC AGTTCCGGCG CTATGATCGC GCGCAGATTT TCGCTTTCGA TTTCGGGGGC
TCGATCCGGG CGGCAGCGCT CGCCTGCGGC GGCGACTGGC AGGATCTCGG AACGAGCCTG
GCAGGTGATG GCGCTGGTGC TGTCATGCTC CAGCCCCTTG CGCGGATCGA CGAGCCTGCC
GAGCGCAACT GGGCGGCGGA ATGGCTCCAG GCGGTCCTGA CCGGCGAGGG CGTAACCGTC
GATCCGGCGA CCAAGGAGCA TCTCTGGTCG GCCCTGACCT CGCTCTCGAC CGCGCTGGTT
GCCGAGCGCA CGCTCACCGG TCTTGCCGTG CTGCTCCAGT CGCAGGCCCT GAAGCAGGCG
CTCGCGCCCT ATTGCATCGG CGGGCCCTTC GGGCGGCTCC TCGATGCCGA GGCCGAACAG
CTGGGCGCAG GCAAGTTCCA GGCTTTCGAA ACCGAAGGGC TGACCGGTTC GGCCGCCGCG
CCTGCCGTGC TCTCCTACCT TTTTCACCGC ATCGAAGGCC GCCTTGATGG CTCGCCGACC
CTCATCATCA TCGACGAGGG CTGGCTGGTG CTCGACAGCC CAGCCTTTGC CGCCCAGCTG
CGCGAGTGGC TGAAAACGCT GCGCAAGAAG AACGCGAGCG TCGTCTTTGC GACCCAGAGC
CTTGCCGACA TCGAAACCTC GGCCATCGCG CCCGCTATCA TCGAAAGCTG CCCCACCCGC
ATCTTCCTGC CCAACGAACG GGCGATCGAA CCGCAGATCC TGTCGGTCTA TCGCCGCTTC
GGCCTCAACG ACCGGCAAAT CGAGATCATC GCCCGCGCGG CCCCCAAGCG CGACTATTAC
TGCCAGTCGG CCCGCGGCAA CCGCCTGTTC GAACTGGGCC TCGGCGAGGT TGCACTCGCC
TTTGCCGCCG CCTCCTCGAA GACCGACCAG CTGGCGATCA GCGAACTGAC CGAGACCCAT
GGCACCGGAG GCTTTGCCCG CGCCTGGCTC AGGCATCGCG GTCTCGCCTG GGCTGCCGAC
ATGCTTCCCC CCGATCCTGT TCCCCCAACC CGCAGCGATC AAGCTGCGGG CCAACCCAAG
GAGTAG
 
Protein sequence
MFSLREYRNK ADRLADFLPW AALVAPGVVL NKDGSFQRSA RFRGPDLDSA TPAELIATTA 
RLNSALRRLG SGWAIFVEAV RRPAHDYPES DFPDAASALV ERERAAQFAE EGAHFESAYY
LTLVWMPPAE DAARAESWLY EGKAHQGVQA RELLELFSDR TDRLLRLIEG FVPEAAWLDD
SETLTYLHSC ISTRNHRVRV PETPMHLDAL LADEPLTGGL EPRLGRAHLR TLTVVGFPSA
TFPGILDELN SQGFAYRWST RAIMLDKTDA AKLLGKIRRQ WFAKRKSVAA ILKEVMTNEA
SALLDSDASN KAADADAALQ ELGSDLQGMA YVTATVTVWD EDAAMAAEKL RLVEKVIQGR
DFTVIVEGMN ALEAWLGSLP GHVYANVRQP PISTLNLAHM IPLSAVWAGP EWDAHFRAPP
LFYARTEGST PFRFALHVGD VGHTLIVGPT GAGKSVLLAL MALQFRRYDR AQIFAFDFGG
SIRAAALACG GDWQDLGTSL AGDGAGAVML QPLARIDEPA ERNWAAEWLQ AVLTGEGVTV
DPATKEHLWS ALTSLSTALV AERTLTGLAV LLQSQALKQA LAPYCIGGPF GRLLDAEAEQ
LGAGKFQAFE TEGLTGSAAA PAVLSYLFHR IEGRLDGSPT LIIIDEGWLV LDSPAFAAQL
REWLKTLRKK NASVVFATQS LADIETSAIA PAIIESCPTR IFLPNERAIE PQILSVYRRF
GLNDRQIEII ARAAPKRDYY CQSARGNRLF ELGLGEVALA FAAASSKTDQ LAISELTETH
GTGGFARAWL RHRGLAWAAD MLPPDPVPPT RSDQAAGQPK E