Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_0315 |
Symbol | |
ID | 3915557 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_007794 |
Strand | - |
Start bp | 339464 |
End bp | 341929 |
Gene Length | 2466 bp |
Protein Length | 821 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640443044 |
Product | conjugal transfer ATPase TrbE |
Protein accession | YP_495597 |
Protein GI | 87198340 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCAGCT TGCGCGAATA CCGGAACAAG GCTGACCGAC TTGCCGACTT CCTGCCCTGG GCCGCGCTGG TCGCGCCCGG CGTGGTGCTC AACAAGGACG GCAGCTTCCA GCGCTCAGCC CGCTTCCGGG GGCCGGATCT AGACAGTGCC ACGCCGGCTG AGCTGATCGC CACCACCGCG CGCCTCAACA GCGCGCTGCG CCGCCTCGGG TCGGGCTGGG CGATCTTCGT CGAAGCCGTG CGCCGCCCGG CGCATGACTA CCCGGAAAGC GACTTCCCCG ACGCGGCCTC GGCCCTCGTC GAGCGCGAGC GCGCAGCCCA GTTCGCCGAA GAAGGTGCCC ATTTCGAGAG CGCCTATTAT CTGACCCTCG TCTGGATGCC TCCCGCCGAG GATGCCGCGC GGGCCGAGAG CTGGCTCTAT GAAGGCAAGG CCCACCAGGG CGTGCAGGCG CGTGAACTGC TCGAGCTGTT CAGCGACCGC ACCGACCGGT TGCTGCGCCT CATCGAAGGC TTCGTGCCCG AAGCCGCCTG GCTCGACGAC AGTGAGACGC TGACATACCT CCACAGCTGC ATCTCGACCC GCAATCATCG GGTGCGCGTC CCCGAGACGC CGATGCATCT CGATGCGCTG CTGGCCGACG AACCGCTGAC CGGAGGGCTC GAACCCAGGC TGGGCCGCGC CCATCTGCGC ACCCTGACCG TGGTTGGCTT TCCGAGTGCG ACGTTCCCGG GCATCCTCGA CGAGCTCAAC TCGCAGGGCT TCGCTTACCG CTGGTCGACT CGGGCGATCA TGCTCGACAA GACCGACGCG GCGAAACTGC TGGGCAAGAT CCGCCGCCAG TGGTTCGCCA AGCGCAAGTC GGTCGCCGCG ATCCTCAAGG AGGTCATGAC CAACGAGGCC TCGGCGCTGC TCGACAGCGA CGCTTCGAAC AAGGCCGCCG ATGCCGATGC GGCACTGCAG GAACTGGGCT CGGACCTTCA GGGCATGGCC TATGTCACGG CCACGGTCAC CGTCTGGGAC GAAGATGCCG CCATGGCGGC GGAAAAGCTC CGCCTCGTCG AGAAGGTTAT CCAGGGCCGC GATTTTACCG TGATCGTCGA GGGCATGAAC GCGCTCGAGG CCTGGCTCGG CTCGCTGCCC GGCCATGTCT ACGCCAATGT CCGCCAGCCT CCGATCTCGA CCCTGAACCT CGCCCACATG ATCCCGCTCT CGGCGGTCTG GGCCGGGCCG GAATGGGACG CCCATTTCAG GGCGCCGCCG CTGTTTTATG CCCGCACCGA AGGCTCGACC CCGTTCCGCT TTGCACTCCA TGTTGGCGAT GTCGGCCATA CGCTGATCGT CGGACCGACC GGAGCGGGCA AATCGGTGCT GCTCGCGCTG ATGGCGCTGC AGTTCCGGCG CTATGATCGC GCGCAGATTT TCGCTTTCGA TTTCGGGGGC TCGATCCGGG CGGCAGCGCT CGCCTGCGGC GGCGACTGGC AGGATCTCGG AACGAGCCTG GCAGGTGATG GCGCTGGTGC TGTCATGCTC CAGCCCCTTG CGCGGATCGA CGAGCCTGCC GAGCGCAACT GGGCGGCGGA ATGGCTCCAG GCGGTCCTGA CCGGCGAGGG CGTAACCGTC GATCCGGCGA CCAAGGAGCA TCTCTGGTCG GCCCTGACCT CGCTCTCGAC CGCGCTGGTT GCCGAGCGCA CGCTCACCGG TCTTGCCGTG CTGCTCCAGT CGCAGGCCCT GAAGCAGGCG CTCGCGCCCT ATTGCATCGG CGGGCCCTTC GGGCGGCTCC TCGATGCCGA GGCCGAACAG CTGGGCGCAG GCAAGTTCCA GGCTTTCGAA ACCGAAGGGC TGACCGGTTC GGCCGCCGCG CCTGCCGTGC TCTCCTACCT TTTTCACCGC ATCGAAGGCC GCCTTGATGG CTCGCCGACC CTCATCATCA TCGACGAGGG CTGGCTGGTG CTCGACAGCC CAGCCTTTGC CGCCCAGCTG CGCGAGTGGC TGAAAACGCT GCGCAAGAAG AACGCGAGCG TCGTCTTTGC GACCCAGAGC CTTGCCGACA TCGAAACCTC GGCCATCGCG CCCGCTATCA TCGAAAGCTG CCCCACCCGC ATCTTCCTGC CCAACGAACG GGCGATCGAA CCGCAGATCC TGTCGGTCTA TCGCCGCTTC GGCCTCAACG ACCGGCAAAT CGAGATCATC GCCCGCGCGG CCCCCAAGCG CGACTATTAC TGCCAGTCGG CCCGCGGCAA CCGCCTGTTC GAACTGGGCC TCGGCGAGGT TGCACTCGCC TTTGCCGCCG CCTCCTCGAA GACCGACCAG CTGGCGATCA GCGAACTGAC CGAGACCCAT GGCACCGGAG GCTTTGCCCG CGCCTGGCTC AGGCATCGCG GTCTCGCCTG GGCTGCCGAC ATGCTTCCCC CCGATCCTGT TCCCCCAACC CGCAGCGATC AAGCTGCGGG CCAACCCAAG GAGTAG
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Protein sequence | MFSLREYRNK ADRLADFLPW AALVAPGVVL NKDGSFQRSA RFRGPDLDSA TPAELIATTA RLNSALRRLG SGWAIFVEAV RRPAHDYPES DFPDAASALV ERERAAQFAE EGAHFESAYY LTLVWMPPAE DAARAESWLY EGKAHQGVQA RELLELFSDR TDRLLRLIEG FVPEAAWLDD SETLTYLHSC ISTRNHRVRV PETPMHLDAL LADEPLTGGL EPRLGRAHLR TLTVVGFPSA TFPGILDELN SQGFAYRWST RAIMLDKTDA AKLLGKIRRQ WFAKRKSVAA ILKEVMTNEA SALLDSDASN KAADADAALQ ELGSDLQGMA YVTATVTVWD EDAAMAAEKL RLVEKVIQGR DFTVIVEGMN ALEAWLGSLP GHVYANVRQP PISTLNLAHM IPLSAVWAGP EWDAHFRAPP LFYARTEGST PFRFALHVGD VGHTLIVGPT GAGKSVLLAL MALQFRRYDR AQIFAFDFGG SIRAAALACG GDWQDLGTSL AGDGAGAVML QPLARIDEPA ERNWAAEWLQ AVLTGEGVTV DPATKEHLWS ALTSLSTALV AERTLTGLAV LLQSQALKQA LAPYCIGGPF GRLLDAEAEQ LGAGKFQAFE TEGLTGSAAA PAVLSYLFHR IEGRLDGSPT LIIIDEGWLV LDSPAFAAQL REWLKTLRKK NASVVFATQS LADIETSAIA PAIIESCPTR IFLPNERAIE PQILSVYRRF GLNDRQIEII ARAAPKRDYY CQSARGNRLF ELGLGEVALA FAAASSKTDQ LAISELTETH GTGGFARAWL RHRGLAWAAD MLPPDPVPPT RSDQAAGQPK E
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