| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_0309 |
|---|
| Symbol | |
|---|
| ID | 3916246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 334136 |
|---|
| End bp | 335332 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640443038 |
|---|
| Product | conjugation TrbI-like protein |
|---|
| Protein accession | YP_495591 |
|---|
| Protein GI | 87198334 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
|---|
| TIGRFAM ID | [TIGR01168] Gram-positive signal peptide, YSIRK family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGGG CGGTCGACAC CGAAAGCCGG GAGCAGCCGC TGGTCGATCC CGAAAGCGCG
GTGAAGCTGC GCGGCGATCC ACCGCGCGTC ATGCGTCTGT CGCGCAAGGC CATCGGACTT
GCCTCGGCTG CTGCCTGTGC GCTGGTCGGC GGCGCCCTGA TCTATGCCCT CCAGCCCGAG
GGCCGAAAAG GCGCCGAAGA ACTCTACAAC ACCGATGGCG TCGCCGTGGC CGACAATCTC
GCCGGGGCGC CCAAGGACTA TGGTCAGGTG CCCAAGCTCG GCCCACCACT TCCCGGCGAT
CTCGGCAAGC CCATCCTCGA TGCCCGGCAG CGCGGCGATG TGGCCGCACT GCCACCGGCC
GGGACGGGAC CCGCGACCAA TCCCGCTGCG GACGCGGCCG CAGCCGCCCG GCAGCGCGCC
GAGCAGGAGC GCGAAGCCGC CCGCGGCAGC CGCCTGTTCT TCGGGGGCGG GAGCGCGGGC
TCTGCCGCAG GCAGTCTGGC CAGTCTGCCT GCGGGAGACG AGGCGCCGGC GGTTGCGCCC
GGCGCGGCCC CTTCATCGGA TGCGGCGCGC CGGCAGGCCT TCCTCGAGCG CACCAGCGAC
CGGCGGACGG TCTCGGGCGA ACGGCTTGTG GGGCTGGCCG CCCCTGCCAT CCTCCAGGCA
GGCTCGGTCA TCCCGGCAGC CCTGATCACC GGCATCCGTT CGGACCTGCC GGGGCTGGTG
ACCGCCCAGG TGACCCAGAA CGTCTATGAC AGCCCGACGG GGCGCATCCT GCTGATCCCG
CAGGGCTCGC GGCTGATTGG CGACTATGAC ACCGATGTCG CTTTCGGTCA GAACCGGGTC
CTGCTTGCCT GGAACCGGCT GATCCTGCCG GATGGCCGCT CGATCGTGCT CGAACGGCAG
CCGGCTTCCG ACACCCAGGG CTTTGCCGGG CTGCAGGACG GCACCGACTA TCACTGGGGC
GGGGTGCTCA AGGCGGCGCT GGTCTCGACC CTGCTCGGCG CCGGCGCGGA ACTGGGTTCC
GGCGATGATG GCAATCTTGC CCGCGCCTTC CGGCGCGGGA CGCAGGACAG CATCAATCGC
GCCGGCGAGC AGATCGTCAG CCGCGAACTC AACGTCCGGC CGACGCTGAC CATCCGTCCG
GGCTTTCCGG TGCGGGTGCT AGTGACGCGC GACCTCGTTC TGGGAGCGGG GCAATGA
|
|---|
| Protein sequence | MTGAVDTESR EQPLVDPESA VKLRGDPPRV MRLSRKAIGL ASAAACALVG GALIYALQPE
GRKGAEELYN TDGVAVADNL AGAPKDYGQV PKLGPPLPGD LGKPILDARQ RGDVAALPPA
GTGPATNPAA DAAAAARQRA EQEREAARGS RLFFGGGSAG SAAGSLASLP AGDEAPAVAP
GAAPSSDAAR RQAFLERTSD RRTVSGERLV GLAAPAILQA GSVIPAALIT GIRSDLPGLV
TAQVTQNVYD SPTGRILLIP QGSRLIGDYD TDVAFGQNRV LLAWNRLILP DGRSIVLERQ
PASDTQGFAG LQDGTDYHWG GVLKAALVST LLGAGAELGS GDDGNLARAF RRGTQDSINR
AGEQIVSREL NVRPTLTIRP GFPVRVLVTR DLVLGAGQ
|
|---|
| |