| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_0288 |
|---|
| Symbol | prfA |
|---|
| ID | 3916225 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 309482 |
|---|
| End bp | 310546 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640443017 |
|---|
| Product | peptide chain release factor 1 |
|---|
| Protein accession | YP_495570 |
|---|
| Protein GI | 87198313 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0216] Protein chain release factor A |
|---|
| TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGCGTTT CCGACGCCCG CCTCGCCCAG ATCGCAGCCC GCTTCGCCGA ACTCGAGGCG
CGCCTGGCTT CGGGCACGCT TGAAGGCGCC GATTTCATCG CGGCCAGCCG CGACTATGCC
GAGCTCGAGC CTGTCGCCCG CGTGGCCGAG GAAGTGCGCG AGATGCGCGG CGAACTCGTC
AGCCTTGCCG CGCTCGACGA CCCCGACATG CGTGAGCTGG CCGACGAGGA ACTCGCCCGC
ATCCGCGCCG AGCTGCCCGA GGCCGAGCAC CGTCTCGCCG TGGCCATGCT GCCGCGCGAT
TCGGCTGACG CACGCCCGGC CATGCTCGAA ATCCGCGCCG GCACCGGCGG CGACGAGGCC
GCGCTGTTCG CCGCCGACCT GTTCCGCATG TACGAACGCT ACGCCGCCGA GCAAGGCTGG
CGGGTCGAGA CGATCAGCGT CAACGCCAAC GATCTGGGCG GCTACAAGGA AGTGGTCGCC
AACGTCGCCG GGCAGGGCGT CTTCGCCAAG CTGAAGTTCG AGAGCGGCGT CCACCGCGTG
CAGCGCGTGC CCGTGACCGA AAGCGGTGGC CGCATCCACA CTTCCGCCGC CACCGTCGCC
GTCCTGCCCG AACCGGACGA GGTCGACGTG GCGATCGAGG ACAAGGACCT CAAGATCGAC
ATCTACCGCG CCAGCGGGGC GGGCGGGCAA CACGTGAACA CCACCGATTC GGCGGTGCGC
ATCACCCACC TCCCCTCCGG CCTCGTCGTC ACCTGCCAGG ACGAGCGCAG CCAGCACAAG
AACAAGGCCA AGGCCATGCA GGTCCTGCGC ACCCGGCTCT ACGACATGCG CCGCGAGGCC
GCGCAGGGCG CCGAGGCCGA AGCGCGCAAG GCCATGGTCG GCAGCGGCGA CCGCTCGGAA
CGCATCCGCA CCTACAATTT CCCGCAAGGG CGCGTGACCG ATCATCGCAT CAACCTGACC
CTGCACCGCC TGCCCGAGAT CCTCGAAGGC CCCGGTCTTG CCGAACTGAT CGATGCCCTG
ATCGCCGAGG ACCAGTCCAA GCGGCTGGCG GCGATGGATG GCTGA
|
|---|
| Protein sequence | MSVSDARLAQ IAARFAELEA RLASGTLEGA DFIAASRDYA ELEPVARVAE EVREMRGELV
SLAALDDPDM RELADEELAR IRAELPEAEH RLAVAMLPRD SADARPAMLE IRAGTGGDEA
ALFAADLFRM YERYAAEQGW RVETISVNAN DLGGYKEVVA NVAGQGVFAK LKFESGVHRV
QRVPVTESGG RIHTSAATVA VLPEPDEVDV AIEDKDLKID IYRASGAGGQ HVNTTDSAVR
ITHLPSGLVV TCQDERSQHK NKAKAMQVLR TRLYDMRREA AQGAEAEARK AMVGSGDRSE
RIRTYNFPQG RVTDHRINLT LHRLPEILEG PGLAELIDAL IAEDQSKRLA AMDG
|
|---|
| |