Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_0250 |
Symbol | |
ID | 3917601 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_007794 |
Strand | + |
Start bp | 260029 |
End bp | 262320 |
Gene Length | 2292 bp |
Protein Length | 763 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640442977 |
Product | TonB-dependent receptor |
Protein accession | YP_495532 |
Protein GI | 87198275 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCAGGT TTTCGCAAAA GCATAAGCTG ATGGCTGTGC TGGCTGCTAC GACATACCTC TTTGCATTGC CGGTTGTGGT GCGGGCGCAG GCTGCCGATC AATCGACGGG CCAGTCGGCA GGCCGAGCCG ATGGCGGGCT GGGCGAAATT GTCGTGACCG CGCAGCGGCG CCAGCAGAAT GTCCAGGATG TGCCGATCGC GATCACGGCC GTCACCGGCG AAGCGCTGCG GGATTCCGGC GTGCGCGATC CGCGCGACCT GACCCTGCTG GTGCCCAGCC TTTCGATGCA GGCTGGCACC GCGGCCTCCA CCACATCGCT GTTCATCCGC GGTGTCGGCA TCGGCGACTT CAATTCCAAC ACCACCGGCG CGGTGGGCGT CTACGTCGAT GACGTGTTCC TCGGCGCCAA CGCGGGCAAG CTGTTCAACG TGTTCGACAG CGAGGGTATC GAGGTGCTCA AGGGGCCGCA GGGCACGCTC TATGGGCGCA ATACCACCGC CGGCGCGATC CGCTTCAGCT CGCGCAAGCC GACCGATACG CTGAGCGGCG ATGTCTCGGC GCTCTATGGC CGTTTCAACG AGGTCCGCAT TGAAGGCGGC GTCGGCGGTC CGATTGCGGG CGACGTGCTT ACCGCGCGCA TCTCGGGCCT CTATCACCGC AACGATGGCA CGACCTTCAA TCGCGTGACC GGCCACCGCG TCAACAACAT CAACCTCTGG GCCGGGCGCG GCATTCTCGA TTTCAAGCCC GACGCGGATA CGCTGGTGCG GCTGACGGTG CACGGCGGCG CGAACAACGG CGGCGCGCGC CAGTTCCAGC ATCGTGGCCA GGGCGTCGAC TTCTTCGGCG ATCCCGCATT CCTGCCCGAT GGCACGCCGA CCGACGGGTT CGGCTATGCC GATACCGACG GCGATCCCTA TGCCGGGGAC TACGACGTCG AGGGCAAGGA GCGCATCCGC GTGTTCGGCG CCTCGCTGCT GGGCCAGTTC ACCTTCGGCG GGGTCCAGCT CACCTCGATC ACGGCCTATG AACAGGTAAA CCGGGCAACC CTGGAGGACA CCGACGCGAG CCCCAACCAG GTCATCACGG CCTACTACGA GGACCGCCCG CGCCAGTTCA GCCAGGAACT GCGCCTGCAA TCGGTGGGCG AGAACACCTT CAACTGGATC GTCGGCGGCT TCTACTTCCA CGACAACCTG AAGACCGACA GCGCCTTCGA TCTTCTGCGA GGCCTGCGCG ATCCATCGGC ACCGCTCGAG GGCTTCGATC CGGCGAATTC TCTGGGCCTG CTGCGCTATC CCTACACCCA GAAGACCGAC AGCTACGCCG TGTTCGGGCA GGGCGACTAC AAGCTGACCG ACCGCCTCAC CGCCACGCTC GGCCTGCGCT ACTCGCACGA TCGCATCGGC ATGAAGTTCG CCAGCCTGTT CGACGCCCTG GGGACGGTGA ATCCGCGCAA GGCCTTTTCG GACGTTGTCG TGCCGCTGAT CGACTTCAAC GAAAGCAAGG GCTTCAATGA CCTGAGCTGG CGCGCGGCGC TCAACTACAA GGTGGACAAC GCGCTCATCT ACGCGTCGTT CTCGAAGGGC TACAACAGCG GGGGCTTTGC CGGCGGGGCC TCGACCGACG CCGCGCAGTT GACGCCGTTT GGTTCGGAAC GGCTCTATGC CTACGAGGTC GGCTTCAAGA CGGACCTGTT TGACCGCCAC CTGCGCTTCA ACGCTTCCGG GTTCTACTAC GATTATCGGG ATCTCCAGGT CTTCATCTTC GACCTGAGCG GGCCCGTACC CGTCCAGCGC AAGCTCAATG CCGGCAATGC GCGGATCTAC GGTCTGGAAG CCGAAATCAC CGCCGTACCC GTGCGCAATC TTGAACTGTT CACGGCGTTC ACGCTGATGG ACAGCAAGTA CAAGACGTTC ACGGCGCTTG GCGGGGCTAG CCTTGCCGGC AATCGCCTTG TAAATGCACC GGAGTTCGCG GGCGCGGCTG GCATCAGGCT GACCGTCCCG ATGGCCAACG GCAGCGAGGT CCGGGCCAAG GTGGACGGCA CCTACACCTC GTCGTTCTTC CTCTATCCCG ACAATCTGGA AGCCAACAAG GTCAAGGGCT ACGGCCTGCT GAACGCCCGC GTTGGCTGGG CCGCGCCCGG AGGTCGTTAC GAGATCGCCC TGTGGGGCAA GAACCTGACC AAGACCGAAT ACATCACTGG CATATTCCCG ATCATCACCC AGGATCAGCT CAACTACAAC GAGCCGCGCA CCTACGGCAT CGAGCTTAGC GCGCACTTCT GA
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Protein sequence | MIRFSQKHKL MAVLAATTYL FALPVVVRAQ AADQSTGQSA GRADGGLGEI VVTAQRRQQN VQDVPIAITA VTGEALRDSG VRDPRDLTLL VPSLSMQAGT AASTTSLFIR GVGIGDFNSN TTGAVGVYVD DVFLGANAGK LFNVFDSEGI EVLKGPQGTL YGRNTTAGAI RFSSRKPTDT LSGDVSALYG RFNEVRIEGG VGGPIAGDVL TARISGLYHR NDGTTFNRVT GHRVNNINLW AGRGILDFKP DADTLVRLTV HGGANNGGAR QFQHRGQGVD FFGDPAFLPD GTPTDGFGYA DTDGDPYAGD YDVEGKERIR VFGASLLGQF TFGGVQLTSI TAYEQVNRAT LEDTDASPNQ VITAYYEDRP RQFSQELRLQ SVGENTFNWI VGGFYFHDNL KTDSAFDLLR GLRDPSAPLE GFDPANSLGL LRYPYTQKTD SYAVFGQGDY KLTDRLTATL GLRYSHDRIG MKFASLFDAL GTVNPRKAFS DVVVPLIDFN ESKGFNDLSW RAALNYKVDN ALIYASFSKG YNSGGFAGGA STDAAQLTPF GSERLYAYEV GFKTDLFDRH LRFNASGFYY DYRDLQVFIF DLSGPVPVQR KLNAGNARIY GLEAEITAVP VRNLELFTAF TLMDSKYKTF TALGGASLAG NRLVNAPEFA GAAGIRLTVP MANGSEVRAK VDGTYTSSFF LYPDNLEANK VKGYGLLNAR VGWAAPGGRY EIALWGKNLT KTEYITGIFP IITQDQLNYN EPRTYGIELS AHF
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